Corynebacterium pseudotuberculosis 3/99-5: Cp3995_0324
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Entry
Cp3995_0324 CDS
T01689
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpl
Corynebacterium pseudotuberculosis 3/99-5
Pathway
cpl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cp3995_0324 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpl03021
]
Cp3995_0324 (rpoC)
03400 DNA repair and recombination proteins [BR:
cpl03400
]
Cp3995_0324 (rpoC)
Enzymes [BR:
cpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cp3995_0324 (rpoC)
Transcription machinery [BR:
cpl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cp3995_0324 (rpoC)
DNA repair and recombination proteins [BR:
cpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cp3995_0324 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEX38796
LinkDB
All DBs
Position
342741..346841
Genome browser
AA seq
1366 aa
AA seq
DB search
MAAKAAKQAEFKASSFFETIPWENRGKGSYVIDVNFFDELRIGLATADDIRRWSKGEVKK
PETINYRTLKPEKDGLFCERIFGPTRDWECACGKYKRVRYKGIICERCGVEVTKSKVRRE
RMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLERIIYFAANIITGVDEEARHSDQTT
LEAEMLLEKKDVEADAESEIAERAQKLEEDLAELEAAGAKADARNKVQKAADKEMQHIRE
RAEREIDRLEEIWQTFIKLAPKQMIIDETIYEELVDRYEDYFTGGMGAEAIQTLIRNFDL
DAEAEELREIINNGKGQKKMRALKRLKVVAAFQRSGNDPAGMVLDCIPVIPPELRPMVQL
DGGRFATSDLNDLYRRVINRNNRLKRMIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRP
VTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLHECGLPKLMALE
LFKPFVMKRLVENDYAQNIKSAKRMVERQRPEVWDVLEEAISEHPVMLNRAPTLHRLGIQ
AFEPKLVEGKAIQLHPLACEAFNADFDGDQMAVHLPLSAEAQAEARILMLASNNILSPAS
GKPLAMPRLDMVTGLYYLTMDKTEGEIGGQGAYQPATEDGPATGVYSSYAEALMARDRGV
LGLQAKIRVRISHLRPPVEVEAEQFPEGWKQGQTWLADTTLGRIMFNELLPWNYPYLEGV
MVRKGGGSNKILLGDVINDLAATYPIITVAQTMDKMKDAGFYWATRSGVTITMSDVLVLP
NKEEILDRYEAEAAKIERKYWEQGALTERERYDRLVELWKEATDEVGNAVEKLYPDDNPI
PMIVKSGAAGNMRQIWTLAGMKGMVVNSKGDYITRPIKTSFREGLSVLEYFNNSHGSRKG
LADTALRTADSGYLTRRLVDVAQDVIVREDDCGTKQGIRVPVAVEVKDAQGNVTGYTGHS
LIETSVAGRVASVDIKDSEGNVLVPAGENLTDQLIEKLIAAGVAEVKVRSVLTCQTPTGV
CAKCYGKSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVGGDITGGLPRVQEL
FEARVPKNRAPIASVAGTVHLEDEGNFYTLTINPDDGSDVVVYEKLSKRQGLATVRVPME
SNPGAMIERTLSEGDHVNVGDRLLRGPADPHDVLEVLGRRGVEQHLVDEVQDVYRAQGVA
IHDKHIEIIIRQMLRRGTVIESGATEFLPGTLVDLSEAKAANAEAIAAGGHPAELRSEIM
GITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENVIIGKLIPAGTGISRYR
NISVKPTEAARNAAYSIPTYGDSIYGDDSYGEFTGASVPLDEAYDL
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagctgctaagcaggcggaatttaaagcatcatcattttttgaaacgatc
ccctgggagaaccgggggaaagggagttacgtgatcgacgtcaacttcttcgacgagctc
cgcatcggcctggctactgccgacgacattcgtcgttggtccaaaggcgaggtcaaaaag
ccggagaccatcaactaccgcaccctgaagccggagaaggacggcctcttctgcgagcga
attttcggcccaacccgcgactgggagtgcgcttgcggtaagtacaagcgtgtccgttac
aagggcatcatctgtgagcgctgtggcgttgaggtgaccaagtccaaggttcgccgtgaa
cgcatgggccacatcgaactggctgcgcccgtcacccacatttggtacttcaagggtgtc
ccgtctcgtctcggttaccttttggacctggctccaaaggatctcgagcgcatcatttac
ttcgcagccaacatcatcactggtgttgacgaggaagctcgccacagcgaccagaccact
cttgaggcagaaatgcttttggagaagaaagacgttgaggctgacgcagagtctgagatc
gcagagcgcgctcagaagctggaagaggaccttgccgagctggaagccgcaggcgctaag
gccgatgcccgcaacaaggtgcaaaaggctgcagataaagagatgcagcacatccgcgag
cgggctgagcgcgagatcgatcgtcttgaggagatctggcagacctttatcaagcttgct
cctaagcagatgatcattgatgagaccatctatgaagagctcgtggatcgttacgaggat
tacttcaccggtggtatgggcgcggaggccatccaaacccttatccgcaactttgacctc
gatgctgaggcagaggaactgcgcgagatcatcaacaatggcaaaggccagaagaagatg
cgtgccctcaagcgactcaaggttgttgctgcattccagcgctcgggcaatgacccagct
ggtatggtgctcgactgcatcccggtgatcccaccggagctgcgtccgatggttcagctc
gatggtggccgttttgctacctccgacctgaacgatctctaccgtcgcgtgattaaccgc
aacaaccgcctcaagcgcatgatcgacctcggtgctcccgagatcatcgtgaacaacgag
aagcgtatgttgcaggagtccgtcgacgcgctctttgataatggtcgccgtggtcgtccg
gtcaccggtcctggcaaccgtccgctgaagtccttgagcgatttgcttaagggcaagcag
ggtcgtttccgtcagaacttgctgggtaagcgtgtcgactactctggtcgttccgttatt
atcgtcggtccacagctgaagctgcatgagtgcggtcttccaaagctcatggctcttgag
ctcttcaagccgtttgttatgaagcgccttgtggaaaacgattacgcgcagaacatcaag
tcggctaagcgcatggttgagcgtcagcgccctgaggtgtgggacgttctagaagaggca
atttctgagcatcctgtgatgcttaaccgtgcacctaccctgcaccgcctaggcatccag
gccttcgagcctaagctcgttgagggtaaagctatccagctgcacccactcgcgtgtgag
gccttcaacgctgacttcgacggtgaccagatggctgtgcacttgccgctatctgctgaa
gcacaggccgaggcgcgcatcctcatgcttgcctccaacaacattctctccccggcatcc
ggtaagccacttgccatgccgcgtctggacatggtgactggtctttattacctcaccatg
gacaagactgagggtgaaattggtggtcagggtgcataccagcctgctactgaggatggt
ccagcaacgggtgtgtactcctcctacgctgaggcacttatggctcgcgaccgtggcgtt
cttggcctgcaggccaagatccgggtacgcattagccatctgcgtccgccggtagaggtt
gaggcagagcagttcccagagggttggaagcagggacaaacctggttggctgataccact
cttggccgcatcatgttcaacgagctcttgccgtggaactacccgtaccttgagggcgtt
atggtccgtaagggtggaggatcgaacaagattctcttgggcgacgtgattaatgatctc
gctgcgacctatccaataattactgttgctcagacgatggacaagatgaaggacgccggt
ttctactgggcaacccgaagcggcgtgaccatcactatgtctgacgtgctcgttcttcct
aataaggaagaaattcttgaccgctatgaggccgaggctgcaaagatcgagcggaagtac
tgggagcagggtgctctgacagagcgcgagcgctacgaccgtctggtcgagctttggaag
gaggctaccgacgaggtcggtaatgccgtcgagaagctctatccggatgacaacccgatt
cctatgatcgtgaagtccggtgctgccggtaacatgcgtcagatctggacgctggctggc
atgaagggcatggttgtgaactcaaagggtgattacatcacccgaccgattaagacctcc
ttccgtgaaggcctgtcggttcttgagtacttcaacaactctcacggttcgcgtaagggc
ctcgccgataccgctctgcgtaccgccgactcgggttacctcactcgtcgtctggtggac
gttgcgcaggatgttatcgtccgcgaggatgactgcggcaccaagcagggcattcgtgtc
ccagtggccgttgaggttaaggatgctcagggcaacgtcaccggttacaccggacacagc
ctcatcgagacctctgttgctggccgcgtggcttccgttgacatcaaggattccgagggc
aacgttctggtaccagctggtgaaaacctcaccgatcagctcatcgagaagctcatcgcc
gcaggcgttgccgaggtcaaggttcgctccgtgcttacctgccagaccccgaccggtgtg
tgcgctaagtgctatggcaagtccatggctaccggcaagctcgttgatatcggagaggca
gtgggcatcgtcgctgctcagtccattggtgagcccggtacccagctgacaatgcgtacg
ttccaccagggtggcgtcggtggtgacatcaccggtggtcttcctcgtgtccaggagctc
ttcgaggctcgtgttcctaagaatcgcgctccgattgcttctgtggcaggtaccgtacac
cttgaggatgaaggtaacttctacaccctcaccatcaacccagacgatgggtcagatgtt
gtggtctacgagaagctctccaagcgtcagggtcttgctaccgtgcgggttcctatggaa
tccaacccgggcgccatgatcgagcgcaccttgtcagaaggcgaccacgtgaacgtgggc
gaccgtctgctacgcggacctgctgatccgcacgacgtgcttgaggttcttggccgccgt
ggtgttgagcagcacctcgtggacgaggttcaggacgtgtaccgcgcacagggtgtggct
atccacgataagcacatcgagatcatcattcgtcagatgctgcgccgcggcaccgtcatc
gagtccggcgcgacagagttccttccgggtactctcgttgacctttcggaggccaaggcc
gctaacgctgaggctattgctgctggtggacatcccgctgagctccgttcggagatcatg
ggtatcaccaaggcgtcgttggctaccgagtcgtggctgtccgctgcgtccttccaggag
accacacgcgtgcttaccgacgccgccattaacaagcggtccgataagctgatcggcctc
aaggagaacgtgatcatcggtaagctgatcccggcgggtaccggtatttcccgttaccgc
aacatctccgtcaaaccgactgaggcagctcgcaatgcggcttactcaatcccaacgtat
ggagattccatctatggcgatgacagctacggtgaattcaccggcgcttccgtgccactg
gatgaggcctacgatctctaa
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