Corynebacterium pseudotuberculosis 3/99-5: Cp3995_0550
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Entry
Cp3995_0550 CDS
T01689
Symbol
uvrD
Name
(GenBank) DNA helicase, UvrD/REP type
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cpl
Corynebacterium pseudotuberculosis 3/99-5
Pathway
cpl03420
Nucleotide excision repair
cpl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cp3995_0550 (uvrD)
03430 Mismatch repair
Cp3995_0550 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpl03400
]
Cp3995_0550 (uvrD)
Enzymes [BR:
cpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cp3995_0550 (uvrD)
DNA repair and recombination proteins [BR:
cpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cp3995_0550 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
Cp3995_0550 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AEX39019
LinkDB
All DBs
Position
559991..563215
Genome browser
AA seq
1074 aa
AA seq
DB search
MIDPIELSRLLKQKFPPTPQQAAVIGAELEPMLVVAGAGAGKTETMAARVVWLVANNIAN
PDRILGLTFTRKAAQQLSQRIRGRLEQLAGMDALRDIDPSGELSYKLEAIAPTVSTYDSY
AGSLIREYGLLLPVEPTSRLITETELFQIAYDIVINYSGSLDTQTQPVNATEKLLSLVSE
IDNHIVSPQDIVEETDAFLSVLDDVEAASKRGLNQILIGWKQRQIIRKQMLPMVAMLKQH
LAYNNLMTFGEQMSLAARLAEENPQVGASQRDRYSVVLLDEYQDTGHAQRVLLRSLFSGA
AVTAVGDPMQSIYGWRGATSANLERFREDFALGEEPAQKRELTVSFRNPPEVLQLANEVS
REVLGAPDNPRRTVQPLSSREGAPHGEVTLGFFPSAEKEREFVADQLAEAYKNRGESFTA
AVLVRKKRHSAPIALELQSRGVPVEIVGLSGLIDIPEVADLIAIAAMLIRPQDTKSALRI
LAGPHVGLGAADILALADRAANLAGRGKAEREEKKTDPLERLEQIIAETLPKAPESVVGL
AEAVADLDVPREEGAATRYSDEGLRRLQLLASELRYLRTHSLGHSLPDLFADIERVFGIR
TEVLQREDPHSDGAPGTVHLDRFAEVVSDFARVPNATLSQFLDYLELSRSQGDGLEPGEV
QVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKTTTSTWLSNESAVPSALRGDAREDDS
LVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEEENARLFYVALTRAEERVLVTASTDI
TKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDALEPPLPEIGVFPQELRPEGADAVKAA
MVDLPELIEDGELFERWEQEVTALIEEHHQLSTPVVPVELGLELTASDIVNLSQDPQAFA
RRRRRPVPFKPNSYAKRGTAFHQWLENRFGATALLDADELPGIDDALDGTELETLKARFL
DSEWADRTPEYVEHPFEVSIGEHIVRGRMDAVFRDADGRWIVVDWKTGQPPTEAAERRSV
SLQLAVYRLAWARLQGVDPSEVQALFHYVGRNFSYRPSELPDEASLARMLALNV
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgatagatccgatcgaactatcgcgattgctcaagcagaaattccctcctacgccgcag
caagcggcagtcataggagctgagctcgaacctatgctggtagtagctggcgccggtgca
ggaaaaacagaaaccatggccgcccgcgtggtatggctggtggctaataacatagcgaat
cctgatcgcatcctgggcctgacgtttaccagaaaagctgcgcaacagctctctcaacgc
atccgaggccggcttgagcaactcgcgggtatggatgcactgagggacatcgacccgagt
ggggagctgtcttataaactagaggctatcgctccgacagtctccacgtacgattcctat
gccggcagcctgatccgagaatatggtttgttattaccggtggaacccacctcacggtta
attacagaaaccgagctttttcagattgcgtatgacatcgttattaactattcagggagc
ttagatacacagacgcaacctgttaacgcgacagagaagctcttgtctttagtctctgaa
atagacaaccatattgtttcgccgcaggacattgtggaagagacagacgcatttttatcg
gtgctagatgacgtagaggcggcgtctaagcgcgggctaaatcagatccttatcgggtgg
aagcagcgtcagataatccggaaacaaatgttgcccatggtcgcgatgctcaagcagcac
ttggcctacaataatcttatgaccttcggcgaacagatgtcgcttgccgccagactcgcc
gaggaaaatccgcaggtaggagcatctcagagggatcggtattccgtggtattgctggat
gaataccaggacaccgggcacgcgcaacgggtgttgttacgcagcctctttagcggcgcc
gcagtcaccgcggtgggcgatccgatgcaatcaatttacggatggcgtggtgctacctct
gccaacctcgagcgttttagagaggactttgcactaggggaagaacctgcgcaaaaacgc
gagttaacggtgagcttccgtaatccccccgaggtccttcagctggccaacgaggtatct
cgggaagtcctgggagccccggacaaccctcgtagaacagtgcaaccgctctcttcccgt
gaaggagcaccgcacggggaagtaacactgggatttttccctagcgcagaaaaagagcgc
gaatttgtagccgatcaattggcagaggcttataaaaatcggggagagagttttaccgct
gctgttctagtgcgaaagaaacggcactctgctcccatcgcgttagaattgcaatcgcgg
ggagttcccgtggaaattgttggtttatctggtcttatagacatccccgaggtcgccgat
ctgattgcgatcgcagcgatgttgattcggcctcaagacacaaaatctgcgctacgaatt
ttagcgggtccgcatgtggggctgggcgcagcagatattctggcattagctgaccgtgcg
gctaacctcgcaggacgcggaaaagctgagcgggaagagaaaaagacagatccgcttgag
cgcctggaacagataatcgctgaaaccctgcccaaggcaccagaatcggtcgtgggattg
gcagaggctgttgcagatcttgatgtaccacgggaagaaggggccgcaactcgttatagc
gacgaggggttgcgcaggctgcaattgctggcatctgagcttagatatctgcgtacgcac
agtttgggccactcattgccagatctttttgcagatattgagcgagtatttgggatccgc
accgaagtattgcagcgagaagatccacactcggacggtgctccaggcacggtacatcta
gatcgttttgctgaagttgtctcggattttgcgcgggttccaaatgcaacgctgagccag
tttttagattatcttgagctgagtagaagccagggagatggcttggagcctggagaagtg
caggttcgttctgaccgcgttcagatcctcactgtgcataaagctaaaggtctggaatgg
cagatcgtgagcgttatgcacgcagactccagcacctataagacaacaacgtcgacatgg
cttagcaacgagtctgcggtgccatcggcgcttcgaggagatgcccgagaagacgattct
ttagtgggagctcccgtttggtacatcgattctgcagaatcgccagctgatctgaaaaaa
caaggagaggctcacatcgcggaatttagggctgtggaagaggaagagaacgcccggtta
ttttatgtggctttgacccgtgcagaggagcgtgttctggttactgcgtcgactgacatc
accaaggcttcgcccccaggaccttatgcgcatcttgatatgctacgcactaaatttcca
gattgcgtggtggaatggttcgacggcgagagcgatgatgcccttgagccgcctcttcca
gagatcggagtttttccgcaagaattgcgccctgagggggcagacgccgtaaaagctgcc
atggtagatcttcctgagctgatagaagatggcgagctcttcgagcgatgggaacaagag
gtaactgcgctcatcgaggaacaccatcagttgagtaccccggttgtccccgtcgagttg
ggccttgagcttacggcctcggacatcgtgaatctttcacaggacccccaagcttttgct
cgaaggcgacgccgcccagttcctttcaaacccaatagctatgccaagcgcggaactgcc
ttccaccagtggcttgaaaaccgttttggcgccacagccctactggacgctgatgagctc
cctggtatcgatgatgcgctggatggaacagaactagagactttgaaagctcgctttttg
gacagcgagtgggcggaccggacccccgaatatgtggagcatccgtttgaggtttctatt
ggcgagcatatagtgcgaggccgcatggacgctgtgtttagggacgcagatggcagatgg
attgttgttgattggaagacgggacaaccccccacggaggctgcggagcgccgctctgta
tcgctgcagctggcggtataccgactagcgtgggcccggttgcagggagtcgacccatca
gaggtacaagcactattccattatgtggggcgcaactttagctatcggcccagcgagctt
ccggatgaggcgtcgttagctcgaatgctggcgttgaacgtgtaa
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