Corynebacterium pseudotuberculosis 3/99-5: Cp3995_1255
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Entry
Cp3995_1255 CDS
T01689
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cpl
Corynebacterium pseudotuberculosis 3/99-5
Brite
KEGG Orthology (KO) [BR:
cpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpl03019
]
Cp3995_1255 (hrpA)
Enzymes [BR:
cpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Cp3995_1255 (hrpA)
Messenger RNA biogenesis [BR:
cpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Cp3995_1255 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_11
nSTAND3
ResIII
AAA_30
NACHT
HA2_N
SLFN-g3_helicase
T2SSE
PhoH
TsaE
AAA_16
ABC_tran
AAA_23
AAA_25
Tc-38
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AEX39717
LinkDB
All DBs
Position
1339691..1343605
Genome browser
AA seq
1304 aa
AA seq
DB search
MANFSRTDTELRSTKESLRAQLSQVSIAEERVFLRRILKASSKSAITAISADIQQAQIAL
SQKAALIPSITFPENLPVSSQRDAIAQAITNNQVVIIAGETGSGKTTQIPKICLELGRGV
RGLIGHTQPRRLAARTVAERIAEELDQKIGSSVGYAIRFDDRVSASTSIKLMTDGILLAE
MQRDRFLNAYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFAQHF
ANANGEPAPIIEVSGRTYPVEILYRPLEIPDGEKLIDVDPIDGLIQAIQELMGYGPGDIL
CFFAGEADIREAMDAIEAKRWKNVEVTPLFGRLSNQEQHRVFSPHSGRRIVLATNIAETS
LTVPGIHFVVDTGTARISRYSTRTKVQRLPIEPISQASANQRSGRCGRVTDGIAIRLYSQ
QDFESRPEFTDPEILRTNLASVILRMASLKLGDIENFPFIQAPDTRAIRDGFLLLKELGA
LADSAKTNSPLLTTVGRTLAKIPLDPRLARMLIAAEEFGCLREAYIVVAALSIQDVRERP
LEKQSQADQLHARFKDTSSDFLSYLKLWEYISEKRTELSGNAFRRTMQSEFLHYMRIREW
SDLIRQLRSIGEQIGWTNPDDIAGHLIPDNLHKALLAGLLSHIGLRDGDSKEFIGSRNSR
FLVFPGSSLAKRPPQFLMAAELVETSRLWARNVAEIDPAWVEHIGKNLLKHNYSEPYWST
KRVAAMVHQRSTLYGVPIIADRPVGYASIDPRAARDMFIREALVNGNWTTHHKFYRRNAE
KLLSAAQIEEKIRRRDVVIDEDALYNFYDSRLPDHITTGRSFDRWWKTAVHKTPHLLDFD
LEKLRRGESANVNEEDFLDIWRRGSLEFGLTYHFDPSAEDDGVTVLVPVPLLGGLDADGF
EWLVPGLLEDLVTELIRSLPKHLRKTVVPAPDFAHKITTMLNYRDGFLYQRIAECLSELG
RPGISADDFNPNTLPKHLKITFAAVDKRGRIIDRDKSLDSLKSRRSEQIRASVSRVSHAV
EQSSAKEWTPQSLGTISQEVTTKVDGQLVTTYPALVVTPEGISVKAMPTKREADISMFTA
TLTLLLKATPVNTQKMLNGLPLQQRVAIENYPHGGATGFVNDAQVAVVRDLIIANGGAVR
SPEEFSKLQTIIKPLVPSKVRAIVVELAPGINSYLRVKSEINKWTGPAIDDINNQLNFLL
PPRAISQHGAHRLKHLPRYVQAITLRLEDMERMPDRDADRQLLVNRLERGLAQKIQKSGQ
GKSAHQVRDIQWLIQELRVSLFAQRLGTTQSVSERKIAKAIEQL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaacttctctcgaacagataccgagctacgctcaacaaaagaatctcttcgcgca
caacttagccaggtcagtatcgctgaggaacgagtcttccttcgtcgtattctcaaagcc
tcttctaagagcgcaatcacagctatctccgcagatatccaacaggctcagatagcgtta
tcgcagaaagcagcgctcattccctctattacttttcctgagaatctcccggtctccagc
caacgcgacgctatcgcacaagccattaccaacaatcaggttgtgattattgctggagaa
acaggatcaggaaaaaccacccagatacccaaaatctgtttagagctaggtcgcggggta
cgtggattaatcggacatacgcaaccgcgtcgactcgcggcacgcactgttgccgagcgt
atagccgaagaacttgaccaaaaaatcggttcttcagtggggtatgccatccgctttgat
gaccgtgtttctgcttctacatccatcaagctgatgactgacggcatcctgctcgcagaa
atgcagcgggatcgattccttaacgcttatgacacgataattatcgacgaagcccacgag
cgcagcctcaacatcgattttattcttggatacctcaaacagcttcttccgcgccgtcct
gatcttaaagtcatcattacttctgccacgattgacccagagcggtttgcgcagcacttt
gccaacgcaaacggtgaacctgcgcccattattgaggtctccggacgtacgtaccctgtt
gaaatcctttatcgtccgcttgaaatccccgatggggaaaagcttatagacgtagatccc
attgatgggctcatccaagccatccaagagcttatgggatatggtcccggcgatattctt
tgtttctttgctggcgaagcagatatccgcgaagcgatggatgctatcgaagccaaacgg
tggaaaaacgtagaggtcacacccctctttgggcgtctctccaaccaagaacagcatcga
gtcttttccccacattccgggcgccgaattgttttggctactaacatcgcggaaacctcg
ctgactgttccgggtattcattttgtcgtggacaccggaacagcccgtatttcaagatat
tccacccggaccaaagtccagcgtcttcctatcgagcctatctctcaagcaagcgctaac
cagagatcaggacgctgtggtcgtgttacagacggcatagcaattaggttgtactcccag
caagactttgaatctcggccagaatttactgatccagagattttacgaacaaacttggcc
agcgtcattctccggatggcttccctcaaattgggagacattgaaaattttccttttata
caagcacccgataccagagctatccgtgacggatttttactgctcaaggagctaggagcc
cttgcagattcagccaaaacaaactccccactcctcactacagtcggccgtactctggcc
aagatacctttggaccctcgtttagctcgcatgctgatcgcggcagaagaatttggttgt
ttaagagaagcctacatagtggtggctgcgctgagtattcaggatgttcgcgagcgtccg
ctagaaaaacaaagtcaagctgatcagctccacgcacgttttaaagacacaagcagcgat
tttcttagctaccttaaactttgggaatacatatcagaaaaacgcaccgagctttctggt
aatgcttttcgacgtaccatgcagtccgaattcttacactacatgcgcattagggaatgg
tcagatcttattcgtcagttacgtagcatcggcgaacaaattggatggaccaacccagat
gacattgcaggtcatctcatcccagataacctgcacaaagctctcctagccggactactg
tctcacatcggtttaagagatggcgattctaaggaattcataggaagcagaaactccagg
tttttggtgtttcctggttcctcattggccaagcgtcccccgcaattccttatggcggca
gagcttgtggaaacttcacggttatgggcgcgtaatgtagcggagatcgatccagcgtgg
gtcgaacatataggtaaaaatctgctcaagcacaattattctgagccgtattggtctaca
aagcgcgtagcagccatggtgcaccaaagatctacgttatacggtgttccgattattgct
gataggccagtcgggtatgcttccatcgatcctcgtgctgctcgcgatatgtttattaga
gaagccctagtcaatggtaattggactactcatcataagttttatcgtcgtaacgcagaa
aaactactctcagctgcgcaaattgaagaaaaaatccgacgtcgcgatgttgtaatcgat
gaagatgctctctataacttctatgattccaggctcccagatcacatcactacaggacgt
tcctttgaccgctggtggaaaacagccgtccataaaacgcctcatcttctagactttgat
ctggaaaaattgcgccgaggtgagtcagcaaacgtcaatgaagaagacttcctcgatatt
tggcgccgaggttctttagaattcggcttaacctaccactttgatcccagcgccgaagat
gacggtgtcactgttcttgttccggtaccattactgggaggactcgatgcagacgggttc
gaatggctagttcctggtttgttagaagatctggttactgagctgatccgttctttacca
aaacacctgcgtaaaaccgttgttcctgcaccagattttgcccataaaatcaccaccatg
ctgaattatcgcgatggtttcctctatcaacgcatcgccgaatgtctatctgaattgggg
cgtcctggaatatctgcggatgattttaacccgaacacactccctaaacacctcaaaata
acattcgctgctgtagataaacgcggacgtatcattgatcgggacaaatcgctcgattcc
ctcaaatcccgacgttctgaacaaatccgagcttcagtttcacgagtgtcccatgccgtc
gagcaatcctctgctaaagaatggacgcctcagtctctaggcactatctcacaagaagtg
actacaaaggtcgatggacagctggttaccacgtatccagccctcgttgttaccccagag
ggtatttcggtcaaagccatgcccactaagcgtgaggccgatatctctatgtttacggcc
acactaacgttgctgcttaaagcaacgcctgtaaatactcagaagatgctcaatggcctc
ccacttcagcaacgagttgctatagaaaactatcctcacggtggggccacaggctttgtc
aacgatgctcaagttgcagttgtaagagacttgatcattgctaacggtggcgctgtgaga
tcaccagaagagttttctaagttacaaacgattattaaaccattagttccgagtaaggta
cgcgcaatagttgtcgagctagcccctggcattaactcttatctccgcgttaaatccgag
ataaacaagtggaccggcccagccatcgacgacattaataatcagctcaattttctcctt
ccaccgcgggcgatatcccaacatggggcacaccgcctcaagcatctcccaaggtacgtg
caagcaatcacgcttcggctcgaagatatggagcgcatgccagaccgggatgcagacagg
cagttactagttaatcgactagagcgaggcttagcacaaaaaatccaaaaatctggacaa
ggaaaatctgctcaccaagtacgtgatattcagtggttgattcaggaattacgtgtcagc
ctttttgcccaacggctagggactacgcaatcagtttctgagagaaaaatcgcaaaagca
atcgaacagctctaa
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