Corynebacterium pseudotuberculosis 3/99-5: Cp3995_1296
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Entry
Cp3995_1296 CDS
T01689
Name
(GenBank) Ribonuclease j
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cpl
Corynebacterium pseudotuberculosis 3/99-5
Pathway
cpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cp3995_1296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpl03019
]
Cp3995_1296
Messenger RNA biogenesis [BR:
cpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cp3995_1296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AEX39757
LinkDB
All DBs
Position
complement(1380161..1382212)
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AA seq
683 aa
AA seq
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MTEPRNRSRKVTRKAGPPEATETPVFQAPDASAEAPAKAEAEKKTSEESSSNQDAPSKGN
RGRSNSGRSGNGTRNGRSRRGGNSQNNKGNRGRRNVVKSMQGADLTERLPEPPKAPKNGL
RIYALGGISEIGRNMTVFEYNGKMLLVDCGVLFPSSGEPGVDLILPDFGPIEDKLDKVEA
LVVTHGHEDHIGAIPWLLKLRPDLPIYASKFTLALIAAKCREHRQRPKLIEVNEKSDINR
GPFNIRFWAVNHSIPDCLGLAIKTGAGLVIHTGDIKLDQTPTDGRPTDLPALSRFGDEGV
ALMLCDSTNATTPGVSGSEADIAPTLKRLVGDAKQRVILASFASNVYRVQAAVDAAVASG
RKVAFNGRSMIRNMEIAEKIGYLKAPRGTIVSMDDAAKMAPHKVMLITTGTQGEPMAALS
RMARREHRQITVRDGDLIILSSSLVPGNEEAVFGVINMLAQIGATVVTSREAKVHTSGHG
YSGELLFLYNAARPVNAMPVHGEWRHLRANKELAISTGVERDRVVLAQNGVVVDLVDGRA
RVVGQIQIGNLYVDGVTMGDIDAGVLEERTSLGEGGLIAITAVIDNRTGRLLERPTVQAK
GFSEDAVAMMPEVAELVENTMTDLAGEGENDPYRMVQQLRRRVSRFVEQKWRRKPMIMPT
VIPTTQTQVEADDEEIRATRESL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaccacgtaaccgttcccgaaaggttactcgtaaagctggcccgccggaggct
actgaaacaccagtgtttcaagcccccgatgcatccgcggaagcaccagctaaagctgaa
gcagagaagaaaacttcagaggaaagctcttctaaccaggatgctccttctaaaggtaat
cgtggacgctccaactctggacgatccggcaacgggacgcgcaatggtcgctcacgccgt
ggcggcaattctcagaacaataaaggcaaccggggtaggcgcaacgtggtcaaatccatg
caaggcgccgatctgactgaacgccttccagagcctcccaaagctccaaagaatggtctg
cgtatctacgctctcggcggtatctctgaaattggtcgtaatatgaccgtttttgagtac
aacggcaaaatgttgttagtcgattgtggtgtgcttttcccctcctccggtgaaccaggc
gtggatttgatcctgcctgattttggtcctatcgaggataagctagacaaagtcgaagcg
cttgttgttacgcatggacatgaagaccacattggagctatcccgtggctgctcaagttg
cgtccagacctgcccatctacgcttccaaatttacgttggctcttattgctgcaaaatgc
cgggagcaccgtcagcgccctaagctgatcgaggtaaacgaaaagtccgacattaaccgt
gggccttttaacattcgtttctgggcagtcaatcactcgattccggattgcttgggtctt
gcgattaaaaccggtgcaggcttggtgattcataccggtgacatcaagcttgatcaaact
ccaacagacggtcgtcctaccgaccttcccgcgctgtctcgcttcggtgatgagggcgtt
gccctcatgctctgcgattccactaatgcaactactccgggtgtctctggctctgaagcc
gatatcgcgccgaccctgaaacgcctcgttggcgatgcgaaacagcgcgtcattttagcg
tcgtttgcctccaacgtatatcgcgttcaggctgcggtagatgctgctgtggcttcgggg
cgcaaagtcgcgttcaacgggcgctccatgatccgtaacatggaaattgcggagaaaata
ggttacctaaaggcgcctcgcggaactattgtcagcatggatgatgctgcaaagatggcg
ccgcataaggttatgctcattaccacgggtacacaaggtgagccgatggcggcactgtcg
cgtatggctcgccgtgagcaccgacagatcacggttcgagatggagatctgatcatcctt
tcttcttccttagtgcctggtaacgaggaagccgtgtttggcgtcattaatatgctggct
cagattggtgcaaccgttgtgacaagccgagaagctaaggttcacacttctggtcacggt
tattccggtgagctgttgttcctttacaacgctgctcgtccggtgaacgctatgccggta
cacggcgagtggcgtcatctgcgcgccaataaggaactggcaatttccactggtgtggaa
cgcgaccgtgtggttctcgcacaaaatggtgttgttgtagacctcgttgatggacgtgca
cgggtggtcgggcaaatccagattggcaatctctacgtggatggcgtcactatgggcgat
atcgacgctggggttctggaggagcgaacctccttgggtgagggcggcctgatcgccatc
acagcggtgatcgataatcggactggaaggctgcttgagcgcccgactgttcaggcgaag
ggtttctccgaagatgctgtagccatgatgcctgaggttgcggaactagtagaaaacact
atgactgacttggccggggaaggcgaaaatgatccttaccgcatggttcagcagttgcgt
cgtcgtgtgtcccgctttgtggaacagaagtggcgtcgtaagccaatgattatgcctacc
gttatcccaaccacacagacccaggtggaagcggatgatgaggagatccgagcaactcgc
gagagcctataa
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