Chiloscyllium plagiosum (whitespotted bambooshark): 122539431
Help
Entry
122539431 CDS
T08871
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03020
RNA polymerase
cpla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122539431 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
122539431 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122539431 (polr2b)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122539431 (polr2b)
Enzymes [BR:
cpla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122539431 (polr2b)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122539431 (polr2b)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122539431 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
122539431
NCBI-ProteinID:
XP_043530205
LinkDB
All DBs
Position
32:25056070..25106138
Genome browser
AA seq
1176 aa
AA seq
DB search
MYDPDDGEDTQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRI
VEDAPPIDLQAEAQHTSGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNL
TYSAPLYVDITKTVIKEGEEQMQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECP
LDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVS
MLARGGQGVRKSAIGQRIVATLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMM
EMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEILQKEVLPHVGVSDFCE
TKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIY
SQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFAST
LSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQP
SPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPDQLMTTLRKLRRQMDIIV
SEVSMVRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVA
SGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINS
IVAIASYTGYNQEDSVIMNRSAVDRGYFRSVFYRSYKEQESKKGFDQEEVFERPSRETCQ
GMRHAIYEKLDEDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRT
SETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTC
EGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDY
GYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGR
SRDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYQVHVCNLCGLMAIANTRTHTYECR
GCRNKTQISLVRMPYACKLLFQELMSMSIAPRMLIS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatccggacgacggcgaggatacgcaatatgatgaagatgatgatgaaatcact
ccagatttgtggcaggaggcttgttggattgttatcagttcatactttgatgagaaaggt
ttggttcgacagcagttggattcatttgatgaattcatacaaatgtcagtgcagagaatt
gtggaagatgctcctccaatagatctccaagctgaagcacagcatacttctggggaagta
gaagagccgcccaggttcttactaaaatttgaacaaatctatttatccaaaccaacacat
tgggaaagggatggggcaccatctccaatgatgccaaatgaagctagattacgaaatctt
acatattcagcccctctctatgtggacatcacaaagacagtgattaaggagggagaggag
cagatgcaaacccaacatcagaaaacgtttataggaaagattcctatcatgcttcgatcc
acatattgtcttcttagtggtctgacagatcgtgatctctgtgagctcaatgaatgccca
ctggatcctggtggatatttcatcatcaatggatcagaaaaggtcctaattgcacaggag
aaaatggcaacaaacacagtgtatgtgtttgcaaagaaggactccaaatatgcgtacaca
ggggagtgtcggtcctgtttagagaattcttctcgtcccacaagtaccatctgggtcagc
atgctagcaagaggaggacagggtgtaagaaaaagtgcaataggccagagaattgttgct
acactgccatatatcaggcaggaagttcctataattattgtgtttcgtgctttgggattt
gtgtctgatcgagacattttggagcacattatctatgattttgatgatcctgaaatgatg
gaaatggtgaagccttcactggatgaagctttcgttatccaggaacaaaatgtcgcattg
aattttattggttcaagaggtgcaaaacctggtgtaacaaaagagaagagaattaaatat
gcaaaggaaatcctgcagaaggaggtgctgccacatgttggagtcagtgacttctgtgag
actaagaaagcttatttcttgggttacatggttcatcgattactattggctgctttaggc
cgaagagaattggatgacagagatcattatgggaacaaaaggctagacctggctggacca
ttgcttgctttcctgtttagaggtatgtttaagaacttgttgaaagaagtacggatatat
tcccaaaagttcatagacagagggaaagatttcaacttggagttggcaattaaaacacgg
attatttcggatggtctaaaatactcattagcaacaggaaattggggtgatcaaaagaag
gctcatcaagccagagctggtgtatcccaggtattgaatcggttgacctttgcttcaact
ctctctcaccttcgtcgtctaaactctccaattggaagagatggaaagctggcaaaaccc
aggcagctgcacaataccttatggggtatgatatgccctgctgagactccagagggccat
gctgtggggctagtgaaaaatctagctttgatggcgtacatttctgtaggatctcagccc
tcgcccattttggaattcttggaagagtggagcatggaaaatcttgaagaaatttctcct
gctgctattgcagatgctacaaaaatttttgtcaacggttgttgggttggaatacataaa
gatcctgaccagctgatgaccacactaagaaagctgaggcgtcagatggatatcattgta
tctgaggtatccatggtgagggacatacgcgagcgtgaaattcggatttatacagatgca
ggtagaatttgccggcctcttttgattgtagagaaacagaagttgcttctgaagaagagg
catattgatcaattgaaagaacgagagtacaacaattacagttggcaggatcttgtggct
agtggtgtggtggagtacattgacacgttggaagaagagacagtaatgttagctatgact
cctgatgacttgcaggaaaagggtgttgcatactgttcaacatatacacattgtgagatt
catccatcaatgattctgggtgtttgtgcatcaattattccatttcctgatcataatcag
tctcccagaaatacgtatcaatctgctatgggtaaacaagctatgggagtttatattaca
aactttcatgtgcgtatggacaccctagcacatgtgctgtattatcctcaaaagccactt
gttacaacccgttccatggagtacctgcgattcagagagctaccagctggtattaactct
attgtagcaattgcttcatatactggttacaatcaagaagattctgtcatcatgaatcgt
tctgcagtagacaggggctatttcaggtctgtattctaccgctcgtacaaagaacaagaa
tcaaagaaaggttttgaccaggaggaggtatttgaaaggccttctcgagaaacttgccag
ggtatgcgacatgcaatttatgagaagctagatgaagatggactaatagcacctggtgtc
cgtgtgtcaggagatgacgtaatcattggtaaaacagtgacgttgccagaaaatgaagat
gagcttgagagcacaaatcggcgatacacaaagagagactgcagcaccttcctgcggact
agtgagactggtattgtggatcaggtcatggttacactaaaccaagaaggatacaaattt
tgcaaaattagggtgcgatctgtccgaattccacaaattggagacaaatttgctagtcgt
catggtcagaagggaacgtgtggtatccagtacagacaagaggatatgccattcacgtgc
gaaggtatcaccccagacattataatcaatccacatgccattccttctcgaatgactgtt
ggtcacttgattgaatgcctacaagggaaggtgtcggcaaataagggtgaaattggtgat
gctacaccatttaatgatgcagttaacgtacagaagatttcaaacctgttatcagactat
ggatatcaccttcgaggaaatgaggttctatataatgggtttacagggcgtaaacttaca
tcacagatctttattgggcctacttattaccagcgcctgaaacatatggtagacgacaaa
attcattctcgtgctcgaggacctgttcagatcctgaacagacagcctatggagggtaga
tctcgtgatggtggtctacgttttggggagatggagcgagactgtcagattgctcatggt
gcagcccagtttttgagagagaggctttttgaggtttctgatccttatcaggtgcacgtg
tgcaatctatgtggactaatggcaattgccaataccaggacacacacttacgaatgccga
ggatgtcgtaacaaaactcagatttcgttggtacggatgccctacgcctgcaaacttctt
ttccaggagttgatgtcaatgagtatcgcaccacgaatgttgatttcttaa
DBGET
integrated database retrieval system
