Chiloscyllium plagiosum (whitespotted bambooshark): 122539833
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Entry
122539833 CDS
T08871
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03013
Nucleocytoplasmic transport
cpla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122539833 (casc3)
03015 mRNA surveillance pathway
122539833 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122539833 (casc3)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122539833 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
122539833
NCBI-ProteinID:
XP_043530863
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Position
33:11812410..11842603
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AA seq
740 aa
AA seq
DB search
MADRRRRRASQDTDEDDEDVPRSDVEAAPSVACILDLSGVQAREAESECESEDGIEGDAV
VLSDYESAEENGSQKSGDEEEVEYSEEDVQKEEIKSSNEGDKDESSKEGKAEDKREITGE
RQSGDGQESAEPIENKIGKKNRRQLDDDEDRKNPAYIPRKGLFFEHDLRGHTEPEEVRPK
VRQRKLWKDEGRWVHDKFQEDEQAPKSRDELISLYGYDIRSDRNPDEIRSRRIRKPRFRS
PQNREPDWMDEPPPPRTYMRKLGSSVPSTRTFNRRVGGPERRSPAKSYSKNAAYNEDRIN
MKPAEINNSRSYHSSGELSISENKMDVKNAEQGHLRENVIVTDSVQSIKNNGLVKEDAVV
QNQSVPTEDVPQVQEKMIEKKSYSRIRRTRNKVPEVGKPVVVEDSSVPALVSPAQQVPVQ
SVPPPVPKAGSWETPPVDPTMTGLEREMTQINLSGKNWPASTQPQYVQPRELRGIPNSLH
IGTAPTQYNRVEDMGNQGRRAKRYSSQRQRPLPEAPPPPPPPPPQQPAPAPPPAPTLGPA
PAPAPAPMHIGLMEGHYYDPLQFQGPIYTHNESPAPLPPQGMIVQPDMHLPHPVPGFNHH
QSPGHLTNPGLYAPQVQMPAGQPPPPQVLPPPFFTPGMMNYGNPSYPYTAGGLPPHIYPT
TQAQSQVFGGVTYYNTVQQQALPKPSPPRRQSQPVTVKPPPPEVLDSSVIWFPCSLGTTP
SEAAKYHDTRSEKLKERNEA
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggcggcggcgacgcgcctctcaggacaccgatgaggacgatgaggatgtg
ccccggtcggacgtggaagccgctccttcagtcgcttgcatcctggatttatccggcgtg
caggctcgtgaggccgagtctgaatgtgagagtgaagatggcatagaaggtgatgctgtt
gtgctttcagactatgaaagtgctgaagagaatggttctcagaaatctggagatgaagaa
gaagtggaatatagtgaagaggatgttcagaaagaagaaataaaatcaagcaatgaagga
gataaagatgagtcctctaaggaaggaaaagctgaagacaaaagagagattactggagaa
agacagagtggagatggacaggaaagtgcagaacctattgaaaataaaataggtaaaaag
aacagacggcaactagatgatgatgaggatcgaaaaaacccagcctatatcccacggaaa
ggactcttctttgaacacgatctccgagggcacaccgaacccgaggaagtgagacccaaa
gtccgccagcggaagctctggaaagatgaaggacgatgggtgcacgataaattccaggag
gatgagcaagcacctaaatcccgagatgaacttatttccctgtatggttatgatattcga
tcagacagaaatcctgatgaaataaggtcacgaaggataaggaagccaaggtttagaagt
cctcaaaatagagagcctgattggatggatgagccaccaccaccaagaacgtacatgcgt
aaacttggcagtagtgttccttccacaagaacttttaaccgaagagtgggaggtccagag
cggagatctccagcgaagagctactcaaaaaatgctgcttataatgaagaccgtattaat
atgaaaccagctgaaataaataactcaagaagttatcactcttcaggagagttgtccatc
agtgaaaataaaatggatgtgaagaatgctgagcagggtcatttgagggagaatgtgatt
gtgacagacagcgtgcagtctatcaaaaacaatggtctagtaaaagaagatgccgttgtg
cagaatcagtctgtccctactgaggatgtgccgcaggtacaggaaaagatgattgaaaag
aaatcttattctcgtattcgaaggaccaggaataaggtgcccgaggtaggaaagccagtg
gtggtggaggacagttctgtaccagctttggtgtctccagcacagcaggttcctgttcaa
tctgtccctcctccagtaccaaaagcaggctcgtgggaaactccgcctgtagaccctaca
atgacggggctggaacgtgaaatgacccaaataaatttatcagggaaaaactggccagcg
agcactcaaccacagtatgtacaaccacgagaacttcgaggaatccccaattcattacac
attgggactgctccaacccagtataatcgggtggaagacatgggtaaccaaggaagacgg
gcgaagcgttactcatctcaacgacagcggccactaccagaagcacctcctccaccgcca
ccccctcctcctcaacaaccggcaccagcaccacccccagcaccaaccctcggaccagca
ccagctcctgcccctgcacctatgcacatcggcctcatggaaggacactattatgaccca
ctacaatttcaaggaccaatatatacccacaatgaaagtccagctcctttaccacctcaa
ggcatgattgtacagccagatatgcatcttccacatccagttccaggtttcaatcaccac
cagtcgcctggtcacctcaccaatccaggtctctatgctccacaagtccaaatgccagct
gggcaaccacctccacctcaggtgctgccccctccctttttcacaccaggaatgatgaac
tatgggaaccccagttatccatacacagctgggggccttccacctcatatttatccaacc
actcaggcccagtctcaggtctttggtggagtcacgtactacaacactgtacagcagcag
gccctgcctaaaccatcacctccacggagacaatcgcagcctgttactgttaaaccaccg
cctcccgaggtacttgattcatccgtcatctggtttccatgcagcttaggtacaacacca
tctgaagctgcaaaatatcatgacacccgaagtgaaaagttgaaagaaaggaatgaagct
taa
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