Chiloscyllium plagiosum (whitespotted bambooshark): 122539885
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Entry
122539885 CDS
T08871
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122539885 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122539885 (dhx8)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122539885 (dhx8)
Spliceosome [BR:
cpla03041
]
Complex C
Other components
Step II factors
122539885 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
GIPC1_GH2
AAA_22
AAA_19
Transformer
nSTAND3
PRP38_assoc
RSRP
AAA_16
ABC_tran
TsaE
T2SSE
Sigma54_activ_2
PhoH
Presenilin
Motif
Other DBs
NCBI-GeneID:
122539885
NCBI-ProteinID:
XP_043530965
LinkDB
All DBs
Position
33:16050695..16103220
Genome browser
AA seq
1206 aa
AA seq
DB search
MADVALDELSKLEYLSLVSKVCTELDNHLGINDKDLAEFIINLAEKNITFETFKGALVKN
GAEFTDSLISNLLRLIQTMRPPAKPSTSGKVETVKPKSEREKMKELFPALCLPDTLPTKS
LLDEDDMKVAADALKELEALMPSKTDHKKSSKRSSNEKGKRKRRSRSRSRDRDRDRDRDR
KRHRRSRSRSHSRDRNKSKSSRRSRSRSLSPNRDHKDRVRANEKNCEKRKDRHVDRPPPE
EPSVGEIYNGKVTSIMQFGCFVQLEGLRYQPFPRKRWEGLVHISELRREGRVANVADVVS
KGQRVKIKVLSFTGSKTSLSMKDVDQDTGEDLNPNRRRNVGGETNEETTMRNPDRPSNLS
LVNTPEIEDDVLERKRLTKISDPEKWEIKQMIAANVISKEEYPDFDEETGILPKVDDEED
EDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREMKQAQR
EAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPQDIPEWKKHAFGGNKASYGRKT
QMSILEQRESLPIYRLKEQLVQAVHDNQVLIVIGETGSGKTTQITQYLAEAGYTTRGKIG
CTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDP
DLSPYAIIMLDEAHERTIHTDVLFGLLKKTVKKRPDMKLIVTSATLDAVKFSQYFYEAPI
FTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILY
ERMKSMGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYV
VDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLT
TNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLT
RLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAK
FHQAEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVV
SCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHEL
VLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRIS
RAFRRR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtggcgttagacgagctcagtaagctcgagtatctgtccctggtgtccaag
gtctgcactgaactggacaaccatctgggcatcaacgacaaggatctggctgaatttatc
atcaatctggctgaaaagaatattacttttgagactttcaaaggagcactggtgaaaaat
ggagctgagtttacggactcactcatcagcaatttgttacgtctaatacagaccatgcga
cctccagccaagccatcgacatctggcaaagttgaaacagtcaaaccaaaatcagaaagg
gagaaaatgaaggagctgttccctgctctctgcctgcctgataccctgcctacaaagagt
ctgttggatgaagatgatatgaaagtagcggcagatgcattgaaggagcttgaagccttg
atgccatcaaagacggatcataaaaagagcagcaaacgcagctctaacgaaaaggggaaa
aggaagagaaggagtcgtagtcgcagcagagacagagacagagaccgagaccgggaccgg
aaacgacatcgcaggtcaaggtccagatcgcactccagagatcgaaacaaaagtaaatcc
agcagacgatccagaagcaggagccttagccctaacagggaccacaaggatcgagtcaga
gcaaatgagaagaactgtgagaagagaaaagatagacacgtagacaggcctccaccagaa
gaaccatctgtgggcgagatctataatggcaaggtcaccagtattatgcagtttggatgc
tttgtacagctggaaggtttaagatatcaaccatttcccagaaaacgatgggagggtttg
gtacacatctctgagctcaggcgagagggacgtgtagccaatgttgctgatgttgttagc
aaaggtcaaagagttaagatcaaggtgctatcatttactggatccaaaacaagcttgagc
atgaaggatgtagatcaagacactggagaggatctaaacccaaaccggcgccgcaatgtt
ggtggggaaactaacgaggaaactaccatgaggaatcctgatagaccaagtaatctgtca
ctggtgaacacccctgagattgaagatgatgtgcttgaacgcaaacgtctcacaaaaatc
tctgatcctgagaagtgggagatcaaacagatgattgcagcaaatgttatctcaaaagag
gagtatcctgactttgatgaagaaacaggcatccttccgaaagttgatgatgaagaagat
gaagaccttgaaattgagctagtggaagaagagcctccgttcctcaggggacatacaaag
cagagcatggacatgagtcctgttaaaatagtaaagaatcctgatggctcactatcccag
gctgccatgatgcaaagcgctttggctaaagaaaggcgggagatgaagcaagcacagcgg
gaggcagaaatggactcgatcccgatgggactgaataaacactgggttgatccactacct
gatgttgatggccgacagattgcagcaaacatgaggggaataggaatgatgccccaagac
atacctgaatggaagaagcatgcgtttggtggaaacaaggcatcttatggtcgtaaaacc
caaatgtctattcttgagcagagagagagcctgcccatctatagacttaaagagcagctg
gtacaggctgtccatgacaaccaagtcctgattgtcattggggaaactggttctggtaaa
actacacaaatcacccaatacttggctgaagcggggtatacaacccggggaaaaattggg
tgcacgcaaccaagacgtgtagctgcaatgtcagttgctaagagagtgtcagaagagtat
ggatgctgtttgggtcaagaggttggttacaccattcgatttgaggattgcaccagtcca
gagactgtgataaagtatatgactgatggtatgttgctcagagagtgcctcatagatcct
gacctgtctccgtatgcaatcatcatgttggatgaggcccatgagaggactatccacact
gatgttctgtttggacttctgaaaaagactgttaaaaaacgtcctgatatgaaattgatt
gtaacatcagccacactggatgcagttaaattctctcagtatttttatgaggcacctatc
ttcacgattcctggccgaacatacccagtggaagtgctttatacgaaagaacctgaaact
gactatctggatgctagtttaattacagtgatgcagattcatttaacagaaccgccaggt
gacattctggttttcctaactggtcaggaagaaatcgatactgcgtgtgagattctgtac
gaacgaatgaaatccatgggcccagatgtgccagaattgattattctgcctgtgtattct
gctttgccaagtgagatgcaaaccagaatttttgatccagcccctcctggtagcagaaag
gttgtaattgctaccaatattgctgaaacatcactgactattgatggcatctactatgtt
gtggatcctgggtttgttaagcagaaagtctataactcaaagacgggtattgaccagctc
gtggtgactccaatttcacaggctcaagctaagcagcgtgctggtcgtgcaggaaggacg
ggacctgggaaatgttatcgactctacactgaacgtgcctacagggacgaaatgttgacc
acaaatgttcctgaaattcaaagaactaatcttgctagtacagtactgtcactcaaggct
atggggatcaatgacctgctttcatttgattttatggatgctcctcctatggaaacccta
atcacagccatggaacagttgtacacgctgggagcactagatgatgaaggtttgctgacg
agacttgggcgcaggatggcagagtttcctctggaacccatgctttgtaaaatgctgatc
atgtctgtacatcttggatgcagtgaagagatgttaacaattgtgtccatgctgtctgta
cagaatgttttctaccgaccaaaggataagcaagctcttgcagatcagaagaaagcaaag
ttccaccaagcagaaggggatcatctcaccttgcttgctgtctacaattcatggaaaaac
aataaattttccaacccttggtgctatgaaaacttcatccaagcgcgttcccttcgcaga
gcacaggatatccgtaaacagatgctgggtatcatggacagacataagctggatgttgtt
tcatgtggaaaagccaccgtgcgagttcagaaagcaatctgcagtggcttcttccgcaat
gcagcgaagaaggacccacaagaaggataccgtacactgattgaccagcaggtggtatac
attcacccctccagtgctctcttcaacagacagcctgaatgggttgtatatcatgaactt
gtcttgactactaaagaatacatgcgagaagtgaccaccattgacccacgctggctagta
gagtttgcacctgccttcttcaaagtgtccgacccaactaaactcagcaagcaaaagaaa
cagcagaggctggagcccctgtacaaccgctatgaagagcccaacgcctggagaatctcg
cgtgcgttcagacgacgttaa
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integrated database retrieval system
