Chiloscyllium plagiosum (whitespotted bambooshark): 122540688
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Entry
122540688 CDS
T08871
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122540688 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122540688 (smfn)
03009 Ribosome biogenesis [BR:
cpla03009
]
122540688 (smfn)
Messenger RNA biogenesis [BR:
cpla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
122540688 (smfn)
Ribosome biogenesis [BR:
cpla03009
]
Eukaryotic type
Pre-60S particles
RNases
122540688 (smfn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
122540688
NCBI-ProteinID:
XP_043532704
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Position
35:20494514..20501987
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AA seq
274 aa
AA seq
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MLRLRALGAGFKVAGVSVTCSRPFWDFAPCPGCLCSAYPCFQSPLSRSEREPLSPRSDSL
LLARSHVTMAAQSMAKRMVWVDLEMTGLDIEKDKIIEMACIITDADLNILAEGPHLIVNQ
PNELLDGMSEWCTEHHGKSGLTQAVRDSKISLQQAEYEFLSFVRQHTPPGLCPLAGNSVH
ADKKFLDKYMPQFMKHLHYRIIDVSTIKELCRRWYPDEYEDAPKKKASHRALNDIRESIK
ELRFYRTHIFKETKADEKKRKTHLENGDNNQQES
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgactgcgcgctctcggtgccggctttaaagtcgccggcgtgtccgtaacctgc
agccggccgttctgggactttgctccgtgtcccggctgcctctgctcggcctacccctgt
ttccagtccccgctcagtcgcagcgagcgggagccgctttcaccccgttccgactcgctc
ctcttagcccggtcacacgtcaccatggcagcccagagcatggccaagaggatggtctgg
gtggatctggagatgactggattggatatagaaaaagataaaatcatagaaatggcatgc
attataactgatgcagatttgaatattttagctgagggtccacacttgattgttaaccaa
ccaaatgagctattggatggcatgtcggagtggtgtacagaacatcatggaaagtcaggc
ctcacacaggcagtgcgtgatagtaagatcagcctgcagcaagcagaatatgaatttctg
tcttttgtacgtcagcatacgccaccaggtctctgtcctcttgcaggaaattcagtccat
gctgataaaaagtttctggacaagtatatgccacagttcatgaagcacttgcattaccga
ataattgatgttagcactattaaagaattgtgcagacgctggtatccagatgaatatgaa
gacgcaccaaagaagaaggcatcacatcgagcactaaatgacatccgtgagagcatcaaa
gaactacggttttacaggacacatatatttaaagaaactaaagcagatgagaagaaaaga
aaaactcatctagaaaatggtgacaataaccagcaagagagctag
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