Chiloscyllium plagiosum (whitespotted bambooshark): 122541035
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Entry
122541035 CDS
T08871
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122541035 (ddx1)
03016 Transfer RNA biogenesis [BR:
cpla03016
]
122541035 (ddx1)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122541035 (ddx1)
Spliceosome [BR:
cpla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122541035 (ddx1)
Transfer RNA biogenesis [BR:
cpla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122541035 (ddx1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
Motif
Other DBs
NCBI-GeneID:
122541035
NCBI-ProteinID:
XP_043533451
LinkDB
All DBs
Position
3
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAEAVEQMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDHEEGKKGGKTSVKTGGAVFSKWQMNPYDRGSAFAIGSDGMCCQSREVKEW
HGCRSTKGVIKGKYYYEVHCHDQGLCRIGWSTSQASLDLGTDKFGFGFGGTGKKSHCKQF
DSYGEEFTMHDTIGCYIDLDKGNVSFSKNGRDLGHAFDIPAHLKTQGLFASCVLKNAELK
FNFGEEEFKFPPKDGFTALSKAVDGHVVKSPHTGTAQVAQTKNLPNAPKALIIEPSRELA
EQTLNNVKQFKKNISDPKLRELLIIGGVSAKDQLAVLEQGVDIVVGTPGRVDDLVSTGKL
NLSQVRFLVLDEADGLLTQGYSDFISRIHSQIPQVTSDGKRLQVIVCSATLHSFDVKKLS
EKIMHFPTWVDLKGEDSVPETVHHVVLKVNPKTDRHWEKLQRHIRTDEVHAKDNTRPGAN
SSEMWSEAIKMLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQMGGGPDKKGHQF
SCVCLHGDRKPNERKQNLERFKRADVRHLICTDVAARGIDIHGIPFVINVTLPDEKQNYV
HRIGRVGRADRMGLAVSLVATEKEKVWYHVCPNRGRGCYNTRLKDQGGCTIWYNELQLLS
DIEEHLNVIITQVEPDLKIPVDEFDGKVVYGKKRATGGGQYRGHVDALASAVQELAALEK
EAQSSFLHFGYLPNQLFKPF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcagagatgggtgttatgccggaaattgccgaggcagtagaacagatg
gattggcttcttccaacagatatccaagctgaatctatacctttgattctgggtggtggc
gatgtgctaatggcagcagaaactggcagtggcaagactggagcattcagtataccagtt
atacagattgtatatgaaacgctcaaggaccacgaagaaggcaaaaaagggggaaaaaca
tctgtcaagactggtggtgcagtatttagcaaatggcagatgaatccctatgatagaggt
tcagcctttgccattggatccgatggcatgtgttgtcagagcagggaagtaaaagagtgg
catggatgcaggtccacaaagggagtgatcaagggcaaatattactatgaagtacattgc
catgatcaaggcttgtgtagaattggttggtctacctcacaggcatcactagatttgggt
actgacaaatttggctttggatttggtggtactggaaagaagtcccattgcaaacagttt
gacagctatggagaggaatttaccatgcatgataccattggatgctatatcgatcttgat
aaaggaaatgtaagcttttcaaaaaatgggagagatcttggacatgcctttgatattcct
gctcatttaaaaacccaaggcttatttgcttcttgtgttttaaagaatgctgaacttaaa
tttaacttcggtgaggaagaattcaagttcccgccaaaagatggttttacagcactaagc
aaagctgtcgatggccatgttgtaaagtcgccacatactggtacagcacaagtggctcaa
actaaaaacttaccaaatgctccaaaggcactcattattgaaccatcaagggaactggct
gaacaaaccctgaataatgtcaagcagttcaagaaaaatatttctgatcccaaactaagg
gagcttctgataattggtggtgtttctgcaaaagatcagctagctgtcctggagcaagga
gtggatattgttgtcggaactcctggaagagtagatgaccttgtctcaacaggaaaactg
aatctgtcccaagttagattcttggtgttggatgaagctgatggactgcttactcaaggc
tactcagacttcatttcaagaatacattctcagatccctcaagtaacatctgatggcaaa
aggttgcaggtcattgtttgctctgccacactgcattcatttgatgttaagaagttgtca
gagaagataatgcatttcccaacctgggtagatcttaaaggagaagattctgttcctgag
accgtacatcatgttgttctaaaagttaatccaaaaactgatcgtcattgggagaaactt
caaaggcatatccggacagatgaagtccatgcaaaagataacacaagacctggcgccaat
agttcagagatgtggtcagaagctattaaaatgctgaagggagaatatacagtccgtgca
atcaaagaacacaagatggaccaagcaatcattttttgcaggactaagattgactgtgat
aacatggaacagtactttattcagatgggaggaggaccagacaaaaagggacatcaattt
tcgtgtgtctgcttgcatggtgatagaaaaccaaatgaacgaaagcaaaacctggaaaga
ttcaagagagcagatgtaagacacctgatctgcactgatgttgctgccagaggtattgac
attcatggaattccttttgtaattaatgtgactcttcccgatgaaaaacaaaactatgtt
cataggattggtagagtgggcagagctgaccggatgggtctagccgtttccttggtggca
actgagaaagagaaggtttggtaccatgtatgtccaaatcgtggaagaggttgctataac
accagacttaaggatcagggtgggtgcaccatatggtacaatgaactgcagctgttgtct
gacattgaagagcacttgaatgtcatcatcactcaagttgagcctgacctgaaaatacca
gtggatgagtttgatggcaaagtagtctatggaaagaaaagagcaacgggaggtgggcag
tataggggccacgttgatgctttagcatctgcagtacaagaattggctgctcttgaaaag
gaggctcaatcctctttcttacattttggctatcttcccaatcaacttttcaaacccttt
tga
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