Chiloscyllium plagiosum (whitespotted bambooshark): 122541118
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Entry
122541118 CDS
T08871
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122541118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122541118
03036 Chromosome and associated proteins [BR:
cpla03036
]
122541118
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122541118
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122541118
mRNA degradation factors
5'-3' decay
Decapping complex
122541118
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122541118
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
122541118
NCBI-ProteinID:
XP_043533646
LinkDB
All DBs
Position
36
Genome browser
AA seq
486 aa
AA seq
DB search
MTTARTENPVIMGLSTQNGQLRGPLKPSAGPGGMPSPQVSQTNQQLQQLKNASTLNGTQQ
QAHTTSSTIKPGDDWKKSLKLPPKDRRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWE
KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKRDCIQAMVIVPTRELA
LQVSQICIQVSKHMGGVKVMATTGGTNLRDDILRLDETVHVVIATPGRILDLIKKGLAKV
DNIQMIVLDEADKLLSQDFVQMMEDIISTLPRSRQILLYSATFPLSVQKFMNSHLQKPYE
INLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQL
GYSCFYIHAKMRQEHRNRVFHDFRNGMCRNLVCTDLFTRGIDIQAVNVVINFDFPKIAET
YLHRIGRSGRFGHLGLAINLITYDDRFNLKAIEEQLGTEIKPIPGSIDKSLYVAEYHSEP
DGEDKQ
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagccaggacggaaaatcccgttatcatgggtttgtctactcagaacgggcag
ttgagaggcccactgaaacccagtgcaggcccaggagggatgccgtcgccacaagtctct
cagaccaaccaacagctacagcagctgaaaaatgccagcacacttaatggcactcagcag
caagcacatacaaccagcagtactattaaaccaggtgatgactggaagaaaagtttaaaa
ttacctccaaaagacaggaggatgaaaacttcggatgtaacagccacgaaaggaaatgaa
tttgaagattactgcttgaagcgtgagttgctaatgggcattttcgaaatgggctgggag
aaaccgtcaccaatccaggaggagagtattcctattgcgttgtctggcagagatatattg
gcccgagccaaaaacggaacaggtaaaagtggagcctacctcattccattacttgaacgg
ctggacctgaaaagagattgtattcaagctatggtaatcgtgcctacccgagagttggca
ctgcaagtcagtcaaatctgtatccaagtcagcaagcatatgggtggtgtgaaagtgatg
gctaccacaggaggaaccaatctccgggatgacatcctgaggctcgatgagacagtccac
gtggtgattgcaacccctggaagaatccttgatttgattaaaaaaggcttggctaaagtg
gacaacatacagatgattgtattagatgaggcagacaaattgctgtcacaggactttgtg
cagatgatggaggacataatctctacattaccaagatccagacaaatcttgctttactct
gccacgttcccactcagtgtacagaagtttatgaattcacatttgcagaaaccatatgaa
attaacctgatggaagagctgacactgaaaggagtaacccagtactatgcctatgttaca
gaacggcagaaagtgcactgtctcaacactctcttctctaggcttcagattaaccagtca
attatattctgcaactcctcccaacgagtggagctgctggctaagaaaatttcccagttg
ggttactcctgtttttacattcatgctaaaatgaggcaggagcatcgtaaccgtgtgttc
catgattttagaaatggaatgtgccgcaatttggtttgcactgatctgttcactcgtggt
attgatatccaagctgtgaatgttgtaataaactttgatttcccaaagattgcagagacc
tatctacatcgaattggcagatcaggacggtttggccacctggggctggcaatcaacctc
atcacgtacgatgatcgctttaatctaaaggccattgaggagcaactcggaacagagatc
aagcccatccctgggagtattgacaagagtttgtacgttgcagagtaccacagtgagcca
gatggggaggacaaacagtaa
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