Chiloscyllium plagiosum (whitespotted bambooshark): 122541220
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Entry
122541220 CDS
T08871
Name
(RefSeq) collagen alpha-1(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122541220
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122541220
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122541220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
DUF3830
Motif
Other DBs
NCBI-GeneID:
122541220
NCBI-ProteinID:
XP_043533779
LinkDB
All DBs
Position
37:14385961..14635048
Genome browser
AA seq
1825 aa
AA seq
DB search
MDLPRSPPTRKSSIWNSSLAVFILTLVLWQSSGIRAADPVDVLQVLQFNRLPEGVRTTTG
FCPKRKSVSSADVAYRISKKAQISAPTKQLFPGGTRFPEDFSIMTLVKPKAGNQAFLLSI
YSEQGMQQVGVEIGRSPVFLYEDHSGKPAPEDYPIFGGINLSDGKLVDRAAPRSHAHSHS
VSLPQGDIQQLLISSDPRAAYDYCQHYSPDCGTPLPDYPQSQEPSAKEYKGKTNGRKQAK
PKAEAAQRKAPLPKPASVKLATAATRNSAVRFSVAATNKAATNKAGITRIPQKSRLNGFQ
QDPTDPALYEEEISVENIPARQDYGEVAVTEELPQIVEADVTKLEQAATTVHPVTGDVVY
KEYFTGEDLGPGDPGYDYDYVYKDYYEEPLPTEIGPGLPVESEVYTEGGQSGPPGPAGPP
GPMGEPGERGRKGRPGLPGADGLPGPPGSSLMLPFRFGASGGDKGPVVSAQEAQAQAILQ
QARLALRGPSGPMGFTGRPGPLGSPGEPGLKGEQGDIGPQGPRGPRGAPGAPGRSGRRGR
PGADGARGMPGESGIKGDRGFDGLPGLPGEKGNRGEPGAQGPMGKQGEDGERGDDGEAGP
RGLPGESGPRGLLGPKGPPGLQGPPGVRGSDGPHGPKGSLGPQGEPGPPGQQGIPGAQGI
PGPQGAMGPPGHKGPTGKPGLPGIPGADGPPGHPGKEGAVGPKGNQGQSGPQGPIGYPGP
RGVKGSEGIRGLKGHKGEKGEDGFSGFKGDMGLKGERGEIGPTGPRGEDGPEGPKGRVGP
PGDPGPLGAPGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGANGEKGARGLQGKLGQRGQ
RGPTGPRGQRGPRGATGKPGAKGSSGTDGPPGPPGERGLPGPQGSTGFAGPKGPPGPPGK
DGLPGHPGQRGEVGFQGKTGPPGPPGVVGPPGASGETGPMGERGHPGPPGPPGEQGLSGQ
SGKEGTKGGPGLKGSQGPPGPPGPAGSPGVRGKAGPGGPIGLPGRPGPQGPPGPAGEKGV
PGGKGPIGPAGRDGVQGPVGLPGPAGTPGGPGEDGDKGEVGEPGHKGRKGNKGEHGPPGP
PGPIGPVGQPGPAGADGEPGPRGQQGHFGQKGDDGPRGFPGSPGPIGLQGMPGPSGTKGE
TGDVGPMGPPGPPGPTGPAGPNGADGPQGPPGGIGNPGSIGEKGEAGESGVPGIQGLPGR
KGPKGERGERGETGQPGEAGPPGTKGPTGDDGPKGNPGPVGFPGDPGPGGEPGPRGQDGA
KGERGETGEQGQAGSPGPTGEVGPPGPTGKRGPAGAPGPEGREGEKGSKGESGAKGPPGK
TGPIGPQGTPGKRGPEGLRGIPGSVGEQGTPGSPGQTGPPGPMGPPGLPGLKGDGGPKGE
KGHPGLIGLIGPPGEQGEKGDRGLPGPSGKEGLKGDTVITFNLHVSNEHQFPAGPPGPKG
SKCSQGPPGEVIQPLPIQRRKKSKRSVSVDGSKMEHDDQVMGDEILDYADGMEEIFGSLN
SLKVEIEQMRHPIGTKENPARTCRDLQLCHEDYQDGVFEVNVEEALFSVKRVEGDNGHSQ
YVLYLSGSGPPGEVIQPLPIQRRKKSKRSVSVDGSKMEHDDQVMGDEILDYADGMEEIFG
SLNSLKVEIEQMRHPIGTKENPARTCRDLQLCHEDYQDGEYSYDPNQGCAADSFKVYCNF
TAGGETCIFPDKKSEGPRQLSYVDSDSNPVGVVQMTFLRLLSVSARQNFTYHCHRSVAWH
HLATDNYDKAMRFLGSNDEEMSFDNNPYIKAIVDGCALRKRNGKRVLEINTPQVEQMPFV
DVLFTDFTEPNQKFGFDVGPVCFQG
NT seq
5478 nt
NT seq
+upstream
nt +downstream
nt
atggatttgccgaggtcccctccgacgaggaagagctcgatatggaactcgagtttagct
gttttcattttgacactagtcctgtggcaatcgtcggggatccgggcagctgatccagta
gatgttttacaagtgttgcagtttaacaggttacctgaaggagtgaggacgaccacaggc
ttctgccccaaaaggaaatccgtctccagtgcagatgtggcttacagaatatccaaaaag
gctcaaatcagcgctcccaccaaacagctcttcccaggaggtactcgattccccgaagac
ttctccatcatgacactggtgaaaccgaaggctggaaaccaagctttcctgctgtccatc
tacagtgagcaaggcatgcagcaggtgggagtggagataggccgttcacccgtcttcctg
tacgaggaccacagtgggaagcctgcacccgaggactaccccatctttggaggcatcaat
ctctcagatggaaagttagtagatagggctgctcctcgctctcacgcacactctcactct
gtctctctccctcagggtgatatccaacagctgctgatatcttcggacccccgggcggcc
tatgactattgccagcactacagcccagactgcggcaccccgctcccggattacccccag
agtcaggaacccagtgccaaggagtataaagggaaaaccaatgggcggaagcaggcgaag
ccgaaagctgaggctgcccagagaaaggcgcccttgccgaagcctgcctccgtcaagctg
gccacagccgccacccggaactctgccgtcaggttcagtgtcgctgccaccaacaaggct
gccaccaacaaggctggcatcacaagaatccctcagaagagccggctaaatggttttcaa
caggatccaacagaccccgctctctatgaggaggagatctccgttgagaacatcccagcc
agacaggactacggtgaggtggcagtcacagaagagctcccgcaaatcgttgaggctgat
gtgaccaagctggagcaggcagctaccaccgtgcacccggttacaggcgatgtggtgtat
aaggagtatttcactggggaagatcttggtcccggtgatccgggctacgattatgactac
gtttacaaagattactacgaggagcccttgcccacggagattggtccgggactgcctgtt
gagagcgaggtatacacagaaggaggtcagtctggccccccaggtccagcaggacctccc
ggacccatgggtgaacctggcgagaggggtcgtaaaggccggcctgggctacctggtgct
gatgggttacctggccctcctggttcatcactcatgctgccattccgattcggcgccagt
ggaggtgacaaggggccggtggtgtccgcgcaggaggcccaggcgcaggcgatcttgcag
caggctcggttggcgttaagaggaccatcaggacccatggggttcacagggcgacctgga
cctttggggagtcctggagagccaggattgaagggagaacaaggagatattgggcctcag
ggtccccgtggtccccgaggcgcgccgggtgcaccaggccgatctggacggaggggtcgc
ccaggagctgatggggcacgaggaatgccaggcgagtctggaattaagggtgaccgagga
tttgatggactgcctggcttgcctggagagaaggggaaccggggggaacctggtgcgcaa
ggaccgatgggaaaacaaggggaagatggagagaggggagatgatggtgaagctggacca
agagggttgccaggggagtctggaccaagaggactccttggacccaaaggaccccctgga
ctgcaaggaccacctggtgtgcgaggatcagatggcccccatggtccgaaaggaagcctg
ggaccacaaggagaaccaggacctcctggacaacaagggatccccggagctcagggtata
cccggtcctcagggagccatgggtcctccgggccacaagggcccaactggaaaacctgga
cttcctggaattcctggagctgatggtcctcctggccacccaggtaaagaaggtgcagtg
ggtccaaagggtaaccagggtcagtctggtccacaaggtcctattggctatcctggccca
cgtggtgtgaagggatctgaaggaatccgagggttgaagggacacaaaggtgaaaagggt
gaagatgggttctcaggcttcaagggagacatgggcctcaaaggcgaacgaggagagatt
gggccaaccggtcctcgaggggaggatggacccgaaggtcccaaaggtcgtgtaggacct
ccaggtgaccctggtcccttgggtgcaccaggtgagaagggtaaacttggagtgcccggt
ctccctggttaccctggacgccagggacctaagggttctcttggtttccccggattccca
ggagctaacggagagaaaggtgctaggggcttgcaaggcaagttgggtcaacgaggacag
cgtggacctacgggtccacgtggtcaacgaggaccaagaggagcaactggaaaaccaggg
gcaaagggaagctcgggaactgatgggcctccgggtcctcctggagaacggggtcttcca
gggcctcaaggatcaactggctttgcaggaccaaagggaccacctggaccaccaggaaag
gacggacttccaggacaccctggacagagaggagaagtgggattccaaggcaagactggc
cctcctggaccaccaggtgtagttggacctccgggcgctagtggtgaaacaggaccgatg
ggtgagaggggacatccaggacctcctgggccacctggggagcaaggtttatctggtcag
tctgggaaagaaggcaccaagggtggaccaggattgaaaggtagtcagggtcccccagga
ccacctggaccagcgggctcccctggagtgagaggcaaagcaggacctggaggtcccatc
ggtctcccaggacgtccaggacctcagggaccacctggccccgcaggggagaaaggagtg
ccgggtggtaaaggcccgattggtcctgctggccgagatggtgtccaaggccctgtcgga
cttccagggcccgcgggcacacctggaggtcctggtgaggatggtgacaagggtgaagtg
ggtgaacctggacacaaagggaggaagggaaacaaaggtgaacatggtccacccggtcct
ccaggtccaatcggtcccgttggtcaaccaggtcctgcaggtgctgatggagagcctgga
ccgaggggccagcagggacattttggacagaagggcgatgatggtcccagaggcttccct
ggatcaccaggtccaattggcctgcagggaatgcctgggccttcaggaaccaagggtgag
actggtgatgttggtcccatgggtccacctggccctcctggtcctaccggccctgccggt
ccaaatggagctgatggtcctcaaggtccccctggaggcattggcaacccagggtccatt
ggagaaaagggtgaagctggagaatccggcgttcctggaatccaaggccttcctgggcga
aagggtccaaaaggtgagagaggagaaagaggagaaactggccaacctggtgaagctggg
cctccaggtactaaagggcccactggcgacgatggacccaagggcaatcctggtcctgtt
ggcttccctggtgaccccggccctggtggtgagcctggaccacgtggtcaggacggtgca
aagggtgaaaggggagagactggtgagcaaggtcaagctgggtctcctggtccaactggt
gaagtaggaccaccaggtccaacaggaaagagaggtccagctggagctcctggtccagag
ggaagagagggcgagaaaggaagcaagggtgaatcaggagccaagggacctcctgggaaa
actggtcctattggcccgcagggcaccccggggaaacgaggtcctgagggtctccgagga
attcctggttctgtgggtgaacaaggaactcctggatccccgggacagacaggtcctcct
ggtccaatgggcccccctggattacctggcttgaagggagatggtggccctaagggagag
aagggtcaccctggcctgattggattgattggaccaccaggagagcagggggagaagggt
gatcgtggcctgcctggtccatcgggaaaagaaggacttaaaggagacactgtaattact
ttcaaccttcatgtttcaaatgaacaccaatttcctgcaggtccgcctggtcctaaaggg
tcaaaatgttctcagggcccaccaggtgaagtaattcaaccgctacctatccagaggcgc
aagaagagcaaacgctcagtgtccgtcgatggcagcaagatggagcatgatgatcaggtg
atgggagatgaaatcctggactatgctgatggcatggaggaaatctttggatcattgaac
tcgctaaaggtggagattgaacagatgagacaccccattggcacaaaggaaaatccagca
cgcacctgcagggatctgcagctctgtcatgaagactaccaggatggagtgtttgaggtc
aatgttgaagaagctttattttctgttaaaagagtagagggagataatggtcacagccaa
tacgtgttgtatctctccgggagtggcccaccaggtgaagtaattcaaccgctacctatc
cagaggcgcaagaagagcaaacgctcagtgtccgtcgatggcagcaagatggagcatgat
gatcaggtgatgggagatgaaatcctggactatgctgatggcatggaggaaatctttgga
tcattgaactcgctaaaggtggagattgaacagatgagacaccccattggcacaaaggaa
aatccagcacgcacctgcagggatctgcagctctgtcatgaagactaccaggatggtgaa
tactcgtatgatccaaatcagggctgtgcagcagattccttcaaggtgtactgtaacttc
actgcgggcggagagacctgtatttttccagataagaagtctgaagggccccgacagctt
tcctatgtggactccgacagtaacccagttggtgtcgtccagatgacattcctaagattg
ctgagtgtgtcagctcgccagaacttcacctatcactgccatcgctcggtagcctggcat
cacctggcaaccgataattacgataaagccatgcgttttctgggatccaatgatgaggag
atgtcattcgataacaacccctacatcaaagccatcgtggatggctgtgcgctgaggaaa
aggaacggaaagagagttctagagatcaatactccacaggttgagcagatgcctttcgtc
gatgtgctgttcacggatttcaccgaacccaaccagaagtttggatttgacgtgggaccc
gtctgcttccagggataa
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