Chiloscyllium plagiosum (whitespotted bambooshark): 122541407
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Entry
122541407 CDS
T08871
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03013
Nucleocytoplasmic transport
cpla03015
mRNA surveillance pathway
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122541407
09122 Translation
03013 Nucleocytoplasmic transport
122541407
03015 mRNA surveillance pathway
122541407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122541407
03041 Spliceosome [BR:
cpla03041
]
122541407
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122541407
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122541407
Spliceosome [BR:
cpla03041
]
Complex C
Other components
EJC/TREX
122541407
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122541407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122541407
NCBI-ProteinID:
XP_043534092
LinkDB
All DBs
Position
37:complement(26259160..26294554)
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAAGDASEVPLKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQISVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEELLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQSR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaacgatgttgacaatgagcttttggactatgaggatgacgaggtcgagaac
caggcagcgggtgatgcgtcagaggtgccgctcaagaaggatgtgaagggctcgtacgtg
tccatacacagttctgggttccgggatttcctgctgaaaccagagttactgcgtgccatt
gttgactgcggttttgagcacccctctgaagtacaacatgagtgcattccccaagcaatt
ctgggcatggatgtcttgtgtcaggccaagtctggcatgggaaaaacggcagtatttgtc
ttggctacacttcaacaactggaacctgtcaccggacaaatttcagtcctggtgatgtgc
cacactcgagaactggcattccaaatcagcaaggaatacgaacggttctccaagtacatg
ccaagcgtgaaggttgcggtgttttttggtgggctctccattaagaaggacgaggagttg
ttgaagaagaactgcccgcacattgtggtgggcacccctggcaggatcctggcactggct
cgcaacaagtctctgaacctcaaacacatcaagcacttcatcctggacgaatgtgacaag
atgctcgagcagctcgacatgcgtcgagacgtccaggagatctttcgcatgacccctcat
gagaaacaggtcatgatgttcagtgccaccttaagcaaggagatccgccctgtttgtcgc
aagttcatgcaagatccgatggagatctttgtggacgacgaaaccaagctgactctgcac
gggctgcagcagtactacgtgaagctgaaagacaacgagaagaaccgcaagcttttcgac
ctgctcgatgttctggagtttaatcaggtggttatttttgtgaagtcggttcagaggtgc
attgccttggcacagctcctggttgagcagaacttccccgccatagccattcaccggggc
atgccccaggaggagaggttatctcgataccagcagttcaaggatttccagcgacggata
ctggttgccaccaacttgtttggccgtgggatggacatcgagcgagtcaacattgtattt
aattatgatatgccagaggattctgacacctacttacacagggtggctagagctggccgt
tttggtaccaagggactggctatcacattcgtgtcggatgaaaatgacgccaagatcctc
aatgatgtgcaggacaggtttgaagtgaacatcagtgagctgcccgacgagatcgacatt
tcctcatacattgaacagagcagatag
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