Chiloscyllium plagiosum (whitespotted bambooshark): 122541422
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Entry
122541422 CDS
T08871
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122541422 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122541422 (skiv2l)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122541422 (skiv2l)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122541422 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
122541422 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Ski2_beta-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
122541422
NCBI-ProteinID:
XP_043534115
LinkDB
All DBs
Position
37:complement(27355248..27410362)
Genome browser
AA seq
1247 aa
AA seq
DB search
MDQERIEVPPKDPLDLPLSILEVGCSGKFELITEPARKNGYIFPLATLPHGLPPYALDLI
TEAEQRFLSDPSFLPLHHFENSQKVWPREICVDSLYHVDVTPVHSTLKVERNQTTGELLG
YKEVLLDDMGLSTKNSLSLQRPPGPPSQSVRGSSTNYPFWPGGLDEPSLDTIKSKGELEE
NIDFEKDLLTVPPGWKRGMDFKKKEHKVTPGLLNLSNLIGAMDDFNLGGSSDEEDEKKAK
ATETKRPFHRTNSLEDLVLQELKVTPQPDQSEQKEERSVPEKEQWAVPVDISTPVDDFYK
RIPDPAFKWPFEPDVFQKQAILRLETHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIY
TSPIKALSNQKFRDFKNTFKDVGLLTGDVQLHPEASCLIMTTEILRSMLYNGSDVIRDLE
WVIFDEVHYVNDAERGVVWEEVLIMLPDHVNLILLSATVPNTLEFADWIGRIKQKKIYVI
STMKRPVPLEHHLYTGNSQKTQNELFLLLDAQGNFLTKAYYAAVEAKKERSSKHSQSFGA
KQPVYHGGSSQDKSVWLSLIDMLRKKDSLPIVAFTFSRNRCDENANMLTTVDLTSTVEKS
EIHIFFQKCISRLKGTDRELPQVLQMVELLKRGIGVHHSGILPILKEVIEMLFTRGLVKI
LFATETFAMGVNMPARTVVFDTIRKHDGTNFRDLTPGEYIQMAGRAGRRGLDTTGMVIIL
CKSGVHEMADLHKMMLGKPTLLQSQFRLTYTMILNLLRVEALRVEDMMKRSFSEFHTRKD
AKIYEQQIQELAKKLSNMDEVECVGQLSDLEHYYNTVRELLYTRDTLQKSIMESTSAFKA
LSVGRVLVVKNQHHKNALGVILQVCTDSSNRSFTTLVLSEPRQEDTGKDVEELPVAPTPD
YLLANKLFLPEGPCGHVVEKLTAKDIGSITVKTLRINADKIIDDYKKRQIPRFRHDPPGP
SVTTATQELLRLVEAHPDGLAGLDPIGDLQLKDLDLVDSYTRARRLEDSLSTFTCFHSPR
FSTEYTRMHERMMIKDELERLRFLVSDRSLMLLPEYEQRVNVLKALKYIDESCAVQLKGR
VACEISNHELIVTEMVFENVLTDLRPEEIVALLSCLVFQQKTQVEPELNEVLRKGIERIR
GVAERIATLQRECSLRESVEDYVEQFKFGLVEVVYEWARGLPFAEITRLTDVQEGIIVRC
IQRLNETCRDVRNAARIIGDPTLNAKMEQASNLIKRDIVFAASLYTQ
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggaaagaattgaagtgcctccaaaggatccccttgaccttcctttgtccatc
ttggaagtgggctgctcaggaaagtttgagttgatcacagagcctgcgagaaagaatggg
tacatcttccccttagcaacgcttccgcatggcttaccaccatacgccttggacctcatc
actgaggcagagcagcgcttcctgtccgacccctcgtttctccccctccatcactttgaa
aactcccagaaggtctggccgagagagatatgtgtggattctctgtatcatgtcgatgtc
acccctgttcattcaacgcttaaagtggagaggaaccagaccactggcgagttgctgggc
tataaagaggtacttctagatgatatgggattgtcgacaaagaactccctttctctgcag
cgaccacctggccctccgtcacagtctgtaagaggcagttccaccaattacccattctgg
ccagggggcttggatgagccgagtttggatacaattaagtcaaagggagaacttgaggaa
aacattgactttgagaaggatttactgactgtgcctccgggatggaaaagaggaatggat
ttcaaaaaaaaagagcacaaagtgacccctggcttactgaatctctcgaaccttattgga
gcgatggatgacttcaatctggggggatccagcgatgaagaggacgagaaaaaggcaaag
gcgactgagaccaagcggcctttccacagaaccaacagcttggaagatttggttttacag
gagctgaaggtcactcctcagcctgaccaaagtgagcagaaagaggaaaggtccgtaccc
gagaaggagcagtgggctgtcccagttgatatcagcacccctgtggacgatttctacaaa
cgcatcccagatccagctttcaagtggcccttcgagccagatgtctttcagaagcaggca
atccttcgcctcgagactcacgattccgtgtttgtggcggcccacacgtcagcgggaaag
actgtagtcgctgagtacgcgatcgcactttcacagaaacacatgaccaggacaatctac
acatcgccgattaaggccctgtccaaccagaaattccgggatttcaagaacacctttaaa
gatgttggccttctgactggagatgtccagttacatccagaagcttcgtgcctcatcatg
acgaccgaaattctcaggtccatgttgtacaatggctcggacgttattcgtgatcttgaa
tgggtgatatttgatgaagttcattatgtcaacgatgctgagaggggtgtcgtatgggag
gaagtgctgatcatgctcccggaccacgtgaacctcattcttctgagtgccacagttccc
aataccctggagtttgccgactggatcgggaggataaagcagaagaagatttacgtgatc
agcaccatgaagaggccggtgcctctggagcaccacctgtacactggtaacagccagaag
acacagaacgaactcttcctgctgctcgacgctcaggggaacttcctcaccaaggcgtac
tacgcagcagttgaagccaagaaggaacgtagcagcaagcactcgcagtctttcggagcc
aagcaaccggtgtatcacggaggctccagccaggataagagcgtgtggttgtccctgatt
gacatgctgaggaagaaggacagtcttcccatcgtggcgttcaccttctcgcggaaccgc
tgtgatgagaatgccaacatgctcaccaccgtcgacctcaccagcactgtggaaaagagt
gagatccacattttcttccagaagtgtatctcccggttaaagggcaccgacagagagcta
ccgcaggtccttcagatggtggagcttctgaagcggggaattggtgtccatcacagtggg
atccttccaatcctgaaggaggttatcgagatgctgtttaccaggggccttgtaaagatt
ctctttgctacagagacctttgcgatgggagtgaacatgccagccagaactgtggtgttc
gacacaatccgcaagcacgatgggacaaacttccgagacctgacaccaggtgaatatatt
cagatggctgggagagcaggaagaagaggactggacacaacagggatggttatcatcctg
tgcaagtctggggtccacgagatggctgacctccacaagatgatgttggggaagccaacg
ctgttgcaatcacagttccgtctaacctacaccatgatcttgaacctgctgcgggtggag
gcgctccgggtggaggacatgatgaagcggagtttctccgagttccacaccaggaaggat
gccaagatatacgagcagcagattcaggagctggcaaagaagctgtcaaacatggatgag
gtggagtgtgttggtcagctgagtgatttggagcactactacaatactgtgagggagctc
ctgtacacgagggacactctgcagaaaagcatcatggaatccacaagcgctttcaaggca
ctgtctgtcgggcgagtcctggtggttaaaaaccaacatcacaagaatgccctgggagtg
atcctgcaggtttgcacagattccagcaaccggtcgttcaccaccctggtcctctcggag
cctaggcaagaggacacgggaaaagatgttgaggaattacctgtggcaccgactcctgac
tacctccttgccaataaactcttccttcctgaaggaccctgtggccacgtggtggagaaa
ctgaccgccaaggacatcggcagcatcaccgttaaaaccctgcgcatcaatgccgacaaa
atcatcgatgactacaagaagaggcagattccccgcttcaggcatgacccacccggtccg
tcggtcaccactgccactcaggagctcctgcggctggttgaggcccaccctgatggccta
gctggcctggaccccatcggcgacctgcagctgaaggacttggacctggtcgacagctac
accagggcgaggagactcgaggactctctcagcacgtttacctgcttccacagccccagg
ttctccaccgagtacacacggatgcatgagcggatgatgatcaaagatgagctggaacga
ctccgtttcctggtgtcggaccggagcctgatgctgctcccagagtatgagcagagagtt
aatgtgctgaaggccctcaagtacatcgacgagagttgtgctgtgcaattgaagggacgg
gtggcctgtgagatcagtaaccatgagctaattgtgacggaaatggtctttgagaacgtg
ctgacagacttgcggccggaggagattgtcgctcttctgtcctgcctggtcttccagcag
aaaacgcaggtggagcctgaactcaatgaggttctacgcaaggggatcgagcggatccgt
ggtgttgccgagaggatagccaccctgcagcgggagtgcagcctgcgtgagtcggttgag
gattacgtggagcagtttaagtttggtttggtggaagtggtgtacgagtgggcccggggt
ctgccctttgctgagatcaccaggcttacggacgtccaggagggcatcatcgtgcggtgc
atacagcggctgaacgagacctgtcgcgacgtgcgcaacgcagcccgcatcatcggggac
cccaccctcaatgccaagatggagcaggcctcgaacctcatcaagagggacattgtgttc
gctgccagcctgtacacccagtga
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