Chiloscyllium plagiosum (whitespotted bambooshark): 122541890
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Entry
122541890 CDS
T08871
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03020
RNA polymerase
cpla04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122541890 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
122541890 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122541890 (polr3a)
Enzymes [BR:
cpla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122541890 (polr3a)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
122541890 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
122541890
NCBI-ProteinID:
XP_043534991
LinkDB
All DBs
Position
38:20243090..20297073
Genome browser
AA seq
1402 aa
AA seq
DB search
MGKEQFRETDVAKKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDNSHTPLTHGVLDHRM
GTSEKDRPCETCGKNLADCIGHYGYIDLELPCFHVGYFKAIIGILQMICKVCSHILLSQE
EKKLFLDTLKRPGLTYLQKRGLKKKVSEKCRKRTFCLYCGSFNGPVKKCGLLKIIHEKYK
TNKKVMDPVVSDFLQSFDIAIEHNKEVEALLGRAQENLNPLVVLNMFKRIPSEDIPLLLM
NLEAGKPADLVLTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSSRTVISPDPNLRIDEVAVPVHVAKILTYPERVTKANLEFMRKLVRNGPEVHPGANF
IQQRHTNLKRFLRYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHIAKV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTGAYLLTRKDTFFDRAKACQIVASILSGKDERIKISLPPPAILRPVTLWTGKQI
FSLILKPSKDCPIKANLRTKGKQYCGKGEDLCYNDSFVVIQNSELMSGSLDKGTLGSGSK
NNIFYILLRDWGQMAAADAMSRLARLAPVYLSNRGFSIGIGDVTPGKGLLKAKQELLEAG
YKKCDEFIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFIFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCTQYDLTVRSSTGDVIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRAIYPCHSEPALSKNEVIVAAEAIMKRSEFLC
CQNEYLQALTGTDCEKYIEAIKNFIKDFSEKIKKTRDKYGINDNGTTEPRVLYQLNRITP
TQVDKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVP
RIKEIINASKSISTPIITAHLDQDDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFI
LVKLSLERIRLLRLEVNAETVKYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYV
LQYLKEELPKIVVQGIPEVSRAVIHIDEQGGKEKYKLLVEGDNLRAVMATHGVKGTHTTS
NNTYEVEKTLGIEGARSTIIHEIQYTMKNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL
AKMKESVLMLASFEKTADHLFDAAYFGQKDLVCGVSECIIMGIPMNIGTGLFKLLHKADK
DPDPPKRPLIFDNNEFHIPIVT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggggaaggaacagttcagggagacggatgtggcgaagaaaataagccacatatgtttt
gggatgaagtctgcagagcagatgaggcagcaagcgcatatccaagtggtcagcaagaac
ctgtatagtcaagataacagtcatactcctttgacccatggtgtactagatcatcgcatg
ggaaccagtgagaaggatcgtccgtgtgaaacatgtgggaagaatctggctgattgcatt
ggacattatggatacattgacttggagctgccatgtttccatgttggttattttaaagct
attattggcatcttgcagatgatctgtaaagtatgctctcatattctgctgtctcaagaa
gaaaagaagctgtttctcgatactttaaaaagacctggattaacctatcttcagaaacga
ggcctaaagaaaaaagtttctgagaaatgcaggaaaaggaccttttgtctatattgtgga
tccttcaatggtcctgtgaaaaaatgcggcttattaaaaattattcatgaaaaatacaag
acaaataagaaagtgatggatcctgtggtatcagattttctacagtcttttgatattgcc
atagaacacaacaaagaagtggaggcgttgcttggaagagctcaggagaatctaaatcct
cttgtggtgttaaatatgtttaaaagaattccctcagaagacatcccactgctgcttatg
aacctggaagcaggaaaacctgcagacctagtccttactcgattactcgttcctccactt
tgtatcagaccttcagtggtcagtgaccttaaatcgggaactaatgaggatgacttaaca
atgaagctgacagaaatcatcttcttaaacgatgtaattaaaaagcatcgaatgtctgga
gcaaaaactcaaatgatcatggaagattgggatttcctacaattacagtgtgcgctttac
atcaatagtgaactttctggaattcctctcaacatggcacccaagaagtggaccagagga
tttgtacaaaggctgaaaggaaaacaaggtcgatttcgaggaaacttgtctggtaaaaga
gtggatttttctagcagaactgtaatctctcctgatcctaacttgcgtatagatgaagta
gcagttccagtacatgtggcaaagatcctgacatatcctgaaagggtaacaaaagctaac
ctggaattcatgcggaagcttgtacgtaatggacctgaagtacatccaggggctaatttt
attcaacagcggcacacaaatctgaagagatttctaagatatggaaatagggagaaaatg
gcacaggaactgaaatatggtgatattgtggagcgacatctaattgatggagatgtagtg
ctgttcaatagacaaccgtccctgcataaactgagcatcatggcccatatagccaaggtg
aaaccccacagaacatttcggttcaatgaatgtgtctgcacaccttataatgcagatttt
gatggtgatgaaatgaatcttcatcttcctcaaactgaggaggccaaggctgaagcactg
gttctaatggggacaaaagccaatttggtaactcctagaaatggggaacctctaattgct
gcaatccaggactttctaacaggtgcctatctgcttaccaggaaggacactttctttgac
agagcaaaagcatgtcagattgttgcctccattctttcaggcaaagacgagcgaatcaaa
attagtcttccacctcctgcaatcttaaggcctgtgacattgtggacagggaagcaaatt
tttagcctcattcttaagccaagcaaggactgtcctattaaagcaaacctgcgtaccaag
ggcaagcagtactgtggaaaaggtgaagacctctgttacaatgactccttcgttgtaatc
cagaacagtgagctgatgtctgggagcttggataaaggaactctgggatcaggttccaaa
aacaacatcttctacatcctgctgagagactggggacagatggcggctgcagacgctatg
tctcgtcttgctcgcctggctcctgtttatctgtccaatcgagggttttctattggcatt
ggtgatgtaacaccaggtaaggggctgctaaaagccaaacaggaactactggaggctggc
tacaagaagtgtgatgaattcattgaagcactcaacacaggcaaacttcaacaacaacct
ggatgcacagcagaagaaacattagaagccttgatccttaaggagctgtctgtgattaga
gaccatgctggcagtgcttgccttagggagctggacaagagtaacagcccccttattatg
gccctctgtggttcaaaaggatccttcatcaacatctcccagatgattgcctgtgtagga
cagcaggccattagtggatcccgtgttcctgatggttttgagaacagatctttgcctcac
tttgaaaagcattctaagcttccagcagcaaaggggtttgtagcagacagtttctattct
ggtttaacgccaacagagttcatcttccataccatggctggtcgtgagggcctagtggat
actgctgtaaaaacagcagaaactgggtacatgcagagacgtctggttaaatctttagaa
gatctttgcacacagtatgatttaactgttcgcagctcaactggtgacgtcatccagttt
atctatggtggtgatggcttagatccagcagctatggaaggcaaagatgaacctttagaa
tttaagagggttctggataatattcgggccatttacccatgtcacagtgaacctgctttg
agtaagaatgaagtgattgtagctgcagaggcaattatgaagagaagcgaatttctttgt
tgtcaaaatgaatatctgcaggctctaactgggactgattgtgagaagtacattgaggca
atcaaaaattttatcaaggatttttccgagaagatcaagaaaactagagacaaatatggg
attaatgacaatggaactactgagccccgtgttttataccagttgaaccgaataactcct
acacaagtagacaaatttctagaaacctgtagagacaagtacatgagagctcagatggag
ccaggttctgctgttggtgctttgtgtgcacaaagtataggagaaccaggcacacagatg
accttgaagactttccactttgctggtgtagcttcaatgaatattactctgggtgtaccc
agaataaaagaaattattaatgcatcaaaatctataagcactccaattattacagcacat
cttgaccaagatgatgatgctgacttcgctcgactggtaaaaggaagaattgaaaagact
ctgctcggagaaatttcagaatatattgaagaagtttttctgcccgatgactgcttcatt
cttgtcaagctttcccttgaaagaatccgacttctgagactagaggtgaacgcagaaact
gtgaaatactctatttgcacatcaaaactgcgagtcaaaccaggtgatgttgcagttcat
ggtgaagctgtcgtgtgtgtcacacctcgagagaatagcaaaagttcgatgtactacgtt
cttcagtatctaaaagaagaactgccaaagattgttgtccaaggtataccagaagtctcc
agagcagttattcatattgatgagcaaggtggaaaggagaagtacaaactactggtggaa
ggtgacaatttgcgtgcagtcatggcaactcatggcgtcaaaggaacacatacaacatca
aacaacacttatgaggtagagaagacattgggtattgaaggtgctcgatccactatcatc
catgagatccaatatacaatgaaaaatcacgggatgagcattgacagaagacatgttatg
cttttgtcagacctgatgacatacaagggcgaagtattgggaataacccggtttggcttg
gcaaaaatgaaagaaagtgtcctcatgttggcctcatttgagaaaactgcagatcatctc
tttgatgctgcatactttggacagaaggacttggtctgtggtgtgtcagagtgtattatt
atgggaatcccaatgaacatagggacaggacttttcaaacttcttcacaaagctgacaag
gacccagacccaccgaagaggccactgatatttgacaataatgaattccatatcccaatt
gttacgtag
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integrated database retrieval system
