Chiloscyllium plagiosum (whitespotted bambooshark): 122541895
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Entry
122541895 CDS
T08871
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpla04121
]
122541895 (zswim8)
Ubiquitin system [BR:
cpla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
122541895 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
122541895
NCBI-ProteinID:
XP_043535009
LinkDB
All DBs
Position
38:complement(21401391..21596072)
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AA seq
1663 aa
AA seq
DB search
MFDRCRITSCSCTCGAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFA
QYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSD
NIKKTLHKFCGPSPVVFSDVNSLYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVRE
MFKRRDSNAAPLLEILTDQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQSEVAAHAC
ASMCDEMVVLWRLAVLDPTMSPQRRKELCSQLRQWHLKVIEIVKRGQHRKSLDKLFQGFK
PAVEACYFSWEEAFPISGITYNSAEKKSTFCWAKAAPHKSSKACAEVHSADSACEPGSEA
TPRTLGPEGAGLKPASVGKSRSPPEPAVRPKDGTAKRKAGPDGSRGNLGRSSSTAMEADK
PVYKAGPTKCKLPQGKCSSSKHSGKRRTSSEDSSLEPDLAELGLDDGTLALGAEASNTFD
FDDGSYKDLYPDESDGFFAEGFRPEANGSVAKPQAGEQLEELSNGEPETPAKADASSKPL
GLEAAKGPAAGEDDYQVYYLNPQEVTKEESKQEGSNEEEQDIFAGLKPLEQESRMEVLFA
CAEALYAHGYNNEACRLAIDLARDLLANPPDLKVEQPQTKGKKNKVSTHKQTLIATNTLA
KAAFLLIVLSERQELHDLAYSIGMFSLELQRPPASTKALEVKLAYQESEIVGLLKKIPLG
VNEMNTIRERAEQLREGSFCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNRNNEMP
GDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQAKLKKILDK
LLDRESQTHKPQTLSSFYSSSKPMATGQKSPSKHASQTTSNVHQITSASSTPQQASVTAP
VQNPPAENFPEGSTQDNVQRTPSETPSESGTFKQEGKIPSRLTLGTRGGYNGRCWGSPVR
QKKKHTGMASIDSSAPETTSDSSPTLSRRPIRGGWAAASWGRGQDSDSISSSSSDSLGSS
SSSGSRRATGGARTKSTDVGRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGN
SSTSIFTHPSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQA
MEIGSAALNILVECWDGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPN
EIQRALVQCKEQDNAMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTAGGSQQQQ
QREMSARGAHEAGRASAEHPPLAEGSATVTVAATVTATAVVPVITVGSTMYQQHTIAGTA
IAHPHGQVFPTSPVMSHPYTTIQTHIPSVCNAAYLGHPIQHVPRPAIFPVAGAAYPQGMH
PAFIGAQYPYTVATTTHPAMAAPPVTFAGVPVPPMAPMAVHPYQSDPNLPLTSTVAVASV
QAGTAFQAVQGASMPTLTTQGPSIVAPTFPTEDEQHSQPVSPQGLHYLHSAYRVGMLALE
MLGRRAHNDHPNNYFSRSPPYTEDVKWLLGLATRLGVNYVYQFCMGAAKGVLSPFVLQEI
IMEALQRLNPAHVHAHLRTPAFHQLVQRCQQAYMQCIQYRLYHIAPADYDDFVNIIRSAR
SAFCLTPVGMMQFNEILQNLKRAKGQTKDLWQRISLEMATFSP
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaccgatgtcggataacctcatgtagctgtacctgtggagctggggcgaaatgg
tgtgctcatgtggtcgctctctgtctcttcagaatacacaacgcctcagcggtgtgtttg
cgtgcaccagtttctgaatcgctttcccgattgcagagagatcagctgcaaaagttcgcc
cagtatttgatcagtgagctgcctcagcagatcctccccactgcacaaagacttcttgat
gagttactttcatcccagtccactgcaattaacaccgtctgtggggctccagatcccact
gctggaccatctgcttcagaccagagcacctggtaccttgatgaatcgacgcttagcgac
aacatcaagaaaactctccacaagttctgtggcccctctcccgttgtgttcagcgatgtc
aactcattgtatttgtcatcgacggagcctccagctgctgcagagtgggcgtgcctccta
cggcccctccgaggacgggaaccagagggcatctggaatcttttgtcaattgtccgcgag
atgttcaaacgtcgtgacagcaacgcagcccccctcctcgaaattctcaccgaccagtgt
ctgacctacgagcagataattggatggtggtacagcgtgcggacctctgcgtcacacagc
agtgccagtggtcacacaggccgcagtaatggtcagtctgaggtggcagcccatgcctgt
gccagtatgtgtgatgagatggtggtcttgtggaggctggcagtcctggatcccaccatg
agtcctcaaaggaggaaggagctctgttcgcagctcaggcagtggcacctgaaggtgatt
gagatcgtgaagcggggccagcatcgcaagtcactggataaacttttccagggtttcaag
ccggccgtcgaggcctgctacttcagctgggaggaggccttccccatctccggcatcacg
tacaacagcgcagagaagaagagcaccttctgctgggccaaggctgcgccgcacaaaagc
agcaaggcctgcgcggaggtgcacagcgctgactcggcctgcgagcctggcagcgaggca
acgccgaggactctgggcccggagggcgccgggttgaaacctgcctctgttggcaagagc
aggagcccacccgagccggcggtgcgcccgaaagacggcacggccaagaggaaagctggt
cccgacgggtcccggggaaacctgggccgctcgtcgtcaacggcgatggaggccgacaag
ccggtttacaaagcgggcccaaccaagtgcaaactacctcaggggaagtgctcctccagc
aagcattcagggaaacggcggaccagcagcgaggacagctcgttggagcccgacctggcc
gaactgggcctggatgacggcaccctagcgctcggggccgaagcttccaacacctttgac
tttgacgacggcagctacaaagacttgtacccggacgagagcgatggcttctttgctgag
ggcttccgtcccgaagccaatggctctgtggccaagccgcaggccggagagcagctcgag
gaactgagcaacggggagccagaaactcccgcaaaggctgacgcctcatcgaaacccctt
gggctagaagccgccaagggtcctgcagcaggggaggacgactatcaggtctactatctt
aatccacaggaggtgactaaggaagagagcaaacaagagggaagtaatgaagaagagcag
gatatcttcgctggtttgaaaccacttgagcaagagagcaggatggaggtattatttgcc
tgtgcagaggctctttacgctcacggctacaataacgaagcttgccgattggcgattgat
ctcgccagagaccttctggccaatcctccggatttgaaggtggaacagcctcagacaaag
ggcaaaaagaacaaggtttcgactcacaagcagaccctcattgctaccaacaccctggcg
aaggctgccttcctgctgatcgtcctcagtgaaaggcaggagctccacgatctagcctac
agcattggaatgttttccctggaattgcagaggccaccagcatcaacgaaagccctggag
gtgaagcttgcctaccaggaatccgagattgtggggctgttgaagaagatcccattgggt
gtgaatgagatgaacacaatccgggagagggcggagcagctgagagaaggcagtttctgt
gattacaggccggttctgccactcatgctggccagcttcatctttgatgtcctgtgtact
ccagtcgtttcaccaactggttcaagacccccaagccgtaatcggaataacgagatgcct
ggcgatgaggagcttggatttgaggcagctgtggctgcgttgggaatgaaaaccacggtc
agtgaggcagagcatccgctgttatgtgaaggtaccaggagagagaaaggagaccttgca
cttgccctgatgattacgtacaaagatgaccaagctaagcttaaaaaaattctggacaag
ttgctggacagagagagccaaacgcacaaacctcaaaccctgagctccttctactcctcc
agtaagccgatggctaccggtcagaaatctccatcgaagcacgcatcgcagacaacttcg
aatgtccatcagataacgagtgcatcatcaacgcctcagcaagctagtgtgacagctccg
gtgcagaaccctcctgcggagaactttccagaagggtccacgcaagacaatgttcagcgc
acacccagcgaaactccgagcgagtcgggcaccttcaaacaggagggtaaaatcccgagt
cgattgacacttggcaccagaggtggatacaatgggaggtgctggggatcaccagtcagg
cagaagaagaaacacacaggtatggccagtatcgacagcagtgctccggagaccacctca
gacagctcccccaccttgagtcgccggcctatccgggggggctgggcggctgcgtcctgg
ggcaggggccaggacagcgacagtatcagcagctcgtcgagcgactcgctcgggtcgtcg
tcctccagcggtagtcgacgagccactggaggagctcgcaccaaaagcacagacgtcggc
cggtacaaaggcaggcgtccagaatgccacgctccccatgtacccaaccagccgtcagag
gcagccgcccatttttactttgagcttgcaaagacggtcctcatcaaagcaggaggcaac
agcagcacgtccatctttacccatccttcagccagtggaggtcaccaaggtccacatcgc
aacctccacctctgcgcgtttgaaatcgggctgtacgcactgggcttgcacaactttgtg
tcaccgaactggctttcaagaacttactcttcccacgtctcctggatcacaggccaggcg
atggagattggtagtgcggctctgaatattttggttgaatgttgggatggtcatttaaca
cctccagaagtggcatcgttagccgatcgtgcctcgcgggcccgggatcccaacatggtc
cgagctgcagcagagttggctttgagttgtctacctcatgcccatgccctgaaccccaat
gagattcaacgagccttggtccaatgcaaggagcaggataacgccatgttggagaaggcc
tgtatggccgtggaggaagcagcgaagggtggtggtgtatacccggaggtactgtttgag
gtcgcccaccagtggtactggctttacgagcagacggcgggtggctcccagcagcagcag
cagcgggagatgtcagcccgcggggcccacgaggcgggccgggcgtccgcggagcaccct
cccctcgccgagggctcggccacagttaccgtggcagccaccgtgacggccactgccgtg
gtgccggtcatcaccgtcgggtccaccatgtaccagcagcacaccatcgccgggacggcg
atcgcacacccccacggacaggtcttccccaccagcccggtcatgagtcacccgtacacg
actatccagacccacatcccgtcggtgtgtaacgctgcctacctgggacatccgatacag
cacgttcctcggcctgcaatcttccctgttgccggagcagcctatcctcaggggatgcat
ccggcattcattggagctcagtacccttacactgtagcaaccacaacccatccagcaatg
gccgctccaccagtcaccttcgctggggttcctgtccctcctatggctccaatggcagtg
cacccttaccagtctgacccgaatctgcccctgacatcaaccgtagcagtggcaagtgtg
caggctggaaccgctttccaggctgttcagggagcgtcaatgccgactttaacaacgcag
ggcccctcaatagtcgccccaaccttccctacagaagacgaacagcactctcaaccagtc
agtcctcagggactgcactacttgcattcagcttacagagttggaatgctagctttggaa
atgcttggaagaagagctcataatgatcacccgaacaattacttctctaggagtccacct
tacaccgaggatgtgaaatggctactcggattagcaaccagactaggtgtgaattacgtc
tatcagttctgcatgggtgcagccaaaggagtgctgagtccgtttgttctacaggagatc
attatggaggctctacagcgccttaatccagctcatgtccatgcccatcttcgaacccct
gcattccatcagcttgttcagagatgccagcaagcatacatgcagtgcatccagtacagg
ttgtaccacatagctccagcagactacgatgactttgtaaacatcattcgcagtgcacgc
agcgccttctgtttaacgccagttgggatgatgcagttcaacgaaatccttcagaattta
aaacgggcaaagggtcaaaccaaggacttgtggcagcgaatttcactggaaatggcaacc
ttctctccttga
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integrated database retrieval system
