Chiloscyllium plagiosum (whitespotted bambooshark): 122541938
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Entry
122541938 CDS
T08871
Symbol
col13a1
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122541938 (col13a1)
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122541938 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122541938
NCBI-ProteinID:
XP_043535125
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Position
38:27118923..27343717
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AA seq
765 aa
AA seq
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MESSPPAARRQLRSAQRCAGLSGLACCLLAVLSLGLCALLHQRTSELQSRVSHLEAEREQ
LPAWLESAVLNRVEELLEQRLKAHLPKSRVARGAPAACVCPPGPPGEKGRHGRRGIPGAA
GPPGRDGFPGNKGSMGLPGRRGLKGEPGEEGAPGDPGISIIGPRGPPGQPGARGFPGYPG
PIGLDGKSGKPGPKGDMGVPGPKGDKGNHGQKGEKGLNGPKGEKGQRGDSALTFTPPRLK
ILPPADQFIRRLYLKGEQGQASSNCSPGPPGPKGPPGHAGKPGVDGLPGKPGDPGKPGRD
GMPGPPGVPGLKGEPGITGLQGKPGMPGLPGRKGEVGELGLPGPAGLPGTVGRKGEQGDL
GQKGEPGEVGRVGAKGEKGEIGRPGMPGKPGAKGSLASTVPGLKGEPGQTGPAGQKGESG
IPGKDGAVGQKGDPGVPGTAAGGVKGEAGPPGLPGPPGLKGEAGVLGPRGPPGPKGEPGK
TEIIDYNGNINDALQGPPGVPGMPGLPGQKGEIGLPGVPGLDGEKGSRGKNGDVGPAGPE
GPPGPKGETGIMGFPGPKGDKGDTGMTGAPGLDGPTGEKGERGEPGLQGPPGLPGPVGLP
GSTADKGEKGDTVSGPPGPPGPEGPPGPMGPHGLPGTKGDPGSDGVKGEKGDRGHLGLPG
ASGFDGQPGPLGVPGPAGPKGERGDKGDPGYAGPIGPRGLPGSLGPKGEKGSRGEKGKRG
SKGPKGDKGDQGVPGLDAPCPLGEDGLPVQGCWNKGQTPWLNAKK
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggaaagctcgccgcccgctgcccggcgccagctccgctcagcccagcgctgcgccggc
ctttcgggcctcgcctgctgcctcctggccgtgctatccctcggcctgtgtgccctcctg
caccagcggacctctgagctgcagagccgggtctcgcatttagaggcggagagagagcag
ctcccggcctggctggaatccgctgtccttaaccgagtggaggaactcctggagcagaga
ctgaaggcacacttacccaagagccgggtggcccgaggggctcctgcagcctgtgtctgc
cccccaggaccaccaggagaaaagggaagacatggtcgcagaggtattccaggggctgct
ggacctccaggaagagatggctttccgggaaacaaaggatccatgggcctaccagggaga
aggggtctaaagggggaacctggcgaagagggagctccaggagatcccggcatctcaatc
attggaccccgtggccctcctggtcagcctggagcaagagggtttccaggatatccgggt
ccgatagggttggatggcaaatctggaaaacctggccctaaaggtgacatgggagtgcct
ggaccgaaaggtgacaagggaaaccatgggcaaaaaggagagaagggtctgaatggtcca
aagggtgaaaagggtcaacgtggagattctgcactcactttcactcctcctcgattgaaa
atactaccacctgctgaccagttcatcagacgcctgtatctcaagggtgaacaaggacaa
gccagtagcaactgctctccaggacccccaggacctaaaggacctccaggccatgcaggg
aagccgggagtggatggtttaccagggaaacccggagatcctggaaaacctggaagggat
ggaatgccaggtccacctggcgtgccaggactgaagggagaaccaggaataacaggactg
cagggcaaaccaggaatgccagggctcccaggaagaaagggagaggttggtgaactggga
cttcctggtccagcaggactgcctggaactgtaggccgaaagggagaacaaggagacctt
ggacaaaagggagaaccgggtgaagttggccgtgttggtgctaaaggagaaaagggggag
attggaaggcctggtatgccaggaaaaccaggagcgaaggggtcacttgcttcaactgta
cctgggctgaagggggagccaggacagactgggccagctggacaaaagggtgaaagtggc
attccagggaaagatggtgcagttggccagaaaggcgatcccggagtcccaggaacggct
gctggtggagtaaagggtgaagcaggtcctccaggattacctggtcctccaggtctgaag
ggtgaagctggtgttttgggaccgcggggtccaccaggtcccaaaggtgagccaggaaag
actgagatcattgactacaacggtaacatcaatgacgcactccagggtcctccaggtgtt
ccaggaatgccagggctcccaggccagaagggtgaaattggattgccaggtgtacccggt
cttgatggagaaaagggttctcggggtaaaaatggtgatgttggacctgctggtccagaa
ggaccaccaggacccaaaggggagacggggattatgggattcccaggaccgaaaggagac
aaaggagacactgggatgacaggagcacctggtctggacggacccactggagagaaagga
gaaagaggtgaaccaggattgcaaggtcctcctggactgccgggccctgtcggtcttcct
ggctcaacagcagataaaggagagaagggtgatacggtgagtggtcctccagggccacct
gggccagagggacctccaggtccaatgggaccacatggtcttccagggacaaagggtgac
cctgggtcagatggtgtgaaaggtgaaaaaggtgaccgaggtcacctgggactgcctggt
gcttctggctttgatggacagcctgggccactgggtgtaccagggccagcaggaccaaaa
ggagaaaggggcgataaaggagatcctggatatgcaggaccaatcggaccacggggatta
cctggttcactgggaccaaagggtgaaaagggaagccggggggagaagggaaagagaggt
tctaaagggcccaaaggggataagggagaccaaggagtgcccggattagatgcaccttgt
ccattgggtgaagatggtttacctgtacaggggtgttggaataaagggcagacgccatgg
cttaatgcaaaaaagtaa
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