Chiloscyllium plagiosum (whitespotted bambooshark): 122542084
Help
Entry
122542084 CDS
T08871
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122542084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122542084
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122542084
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122542084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
FlgM
Motif
Other DBs
NCBI-GeneID:
122542084
NCBI-ProteinID:
XP_043535356
LinkDB
All DBs
Position
39:1098816..1188202
Genome browser
AA seq
726 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVSEGVETFEDIWQKVHSAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLQENRKLIETQMERFKIVERETKTKAYSKEGLGSATKVDPAQKE
KEEICQWLTICLSFQNTIDTLNMQVDLFESEMETLSAVTRKKKGEKEKQDRLEELKQHIE
RHRYHIKMLETLLRMLDNSTIEVDQIKKIKDDVEYYVDSSQDPDFKENEFLYDDLDLEEI
AQTSIMATSPASNSNSNVEDELFNQCNSTPTSTTSSSPVPLSPANQSVENHEDERKRSRS
DSEMSLSPAKVLGSKTHHGNNLPPSISISQSAQGLNSTKTPTLPSNGSSNGGNKLLQSSK
TYSLTQGTNSASAYAAAVAAGTTTINTTSSFQSRPANAVPIPTNKQQNGTASYSAVVAEN
SVEHQNNYSLPSSTNSQPTGSTPIQNNVKEPVSVSVASTTNIIPVLAASQVNTQASNFSD
LKPTQALMNGPLPFVSQDLKQAPETLSSLKSMAERAAVSAGLEEQVQSLHLNERDLFSTP
SSQSNSMTSNVPQTTEVHLQPMLGVCPLSPVHLSKDQEYQLHMVESAWLHMPHPSDSERI
RHYLPRNPCPTPPYHHQIPPVHSDTLEFYQRLSTETLFFIFYYLEGTKSQYLAAKALKKQ
SWRFHTKYMMWFQRHEEPKTITDEYEQAFFLTQQGTYIYFDYEKWGQRKKEGFTFEYRYL
EDRDLQ
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaagttgcagggggaaattgatcgctgtctgaagaaagtcagcgag
ggtgtagaaaccttcgaagacatctggcaaaaggttcacagtgcagcgaacgcaaatcag
aaggaaaaatatgaagctgacctgaagaaagaaattaaaaaactacagaggttgcgagac
caaataaagacatgggtggcctccaacgaaatcaaagacaagaggcagctacaagaaaac
cgaaagttaattgaaacgcaaatggaaaggttcaagatagtggagagagaaacgaagacc
aaagcctattctaaagaagggctgggatcagcgacgaaggtggatcccgcacagaaggaa
aaggaagaaatctgtcaatggctgacgatctgtctttcatttcagaatacgatagacaca
ttaaatatgcaggttgacctttttgaaagtgaaatggaaactttgtctgcggtgacaagg
aaaaagaaaggtgaaaaagagaaacaagacaggttagaagaattgaagcaacacatcgag
aggcacaggtatcacattaaaatgctggaaactctgctgcgcatgttagacaacagcacg
atagaagtggaccagattaagaagatcaaagatgatgttgaatactatgttgattcatct
caggacccggactttaaagaaaatgaatttttatacgatgatcttgatcttgaggagata
gcacaaacctcaataatggcaacatcaccagcaagcaatagtaacagcaatgtggaagat
gaactttttaaccagtgtaacagcactcccacctctacaacctcaagttctcctgtcccg
ctcagtccagccaatcagtctgtggaaaatcatgaagatgaacgcaagcggagtaggtca
gacagcgaaatgagcttgtctcctgcaaaggttcttggcagcaagactcaccatggtaac
aatctccctccatccatttctatttcccagagtgcgcaggggttgaacagcacaaaaaca
ccgaccctgccctcgaatggatccagcaatgggggaaacaagctgctgcaatctagcaag
acctattctctgacacaaggaacaaattcagcttctgcatatgcagcagctgtggcagca
ggaaccaccacaatcaataccaccagctcattccagtcaagacctgccaatgctgtgcct
attcccactaacaagcagcaaaatggaactgcaagttatagtgcagtggttgctgagaac
agtgtggaacatcagaacaattacagtcttccttccagtacaaacagccagccaactggt
tcgactccaatacagaataatgtgaaagaaccagtcagtgtatctgtagccagcacaaca
aacatcatccctgtgcttgcagccagtcaagtcaacactcaagcctcaaacttctccgat
cttaaaccaacacaagccctgatgaatggtcccttaccttttgtctcccaggatttaaag
caggctccagagacactcagttccttaaaaagcatggcagaacgagcagctgtaagtgca
ggattggaagaacaggttcagtctttgcatttgaatgagagagatctcttcagcacccca
tcatcgcagagcaattcaatgacttctaatgttccacaaacgacagaagttcatcttcag
ccaatgttgggtgtgtgccctctgagcccagtacatctttcgaaggaccaagaatatcag
ctacacatggtggaatcagcctggcttcatatgcctcacccatcagactctgagaggata
cgacactacctcccacgaaacccatgtcccacaccaccttatcaccatcagattcccccc
gtccattcagatactttggagttctaccagcgattgtccactgaaactctcttcttcatc
ttttactacctagaggggaccaagtcccagtatttagctgctaaagctttgaagaagcaa
tcttggagattccacaccaagtacatgatgtggttccagagacacgaagagccaaaaacc
atcaccgatgaatatgaacaggctttctttctgacccaacagggaacatacatttacttt
gactatgaaaaatggggccagagaaagaaagaaggctttacgttcgagtacagatacttg
gaggacagggacctgcagtaa
DBGET
integrated database retrieval system
