Chiloscyllium plagiosum (whitespotted bambooshark): 122542107
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Entry
122542107 CDS
T08871
Symbol
tnrc6ba
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122542107 (tnrc6ba)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122542107 (tnrc6ba)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122542107 (tnrc6ba)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122542107 (tnrc6ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
122542107
NCBI-ProteinID:
XP_043535415
LinkDB
All DBs
Position
39:2329958..2544921
Genome browser
AA seq
1840 aa
AA seq
DB search
MSRRRFRQNVRILPEMNTTTHLNPPSKRANTRRAALNPILAISHREKEEEKEEQLMEEKK
RKKEDKKKKDATQKVTEQKTKVPEATKPSLSQPPTATPVGSVPTPAANGGNNAKRAVATN
GQPQNAARYLPREVPPRFRQHEHKVLLKRGQPPPPSCGLLGGGAGPPGLPGSNPGAAQPL
TQSNCPLQHGSTPVDANPGGAGSNYANSAWGSGSSSTDLNHGWDKLIVDGSDMEAWPCIT
GRDSESASEHVDNEGASNFGSEKSLPPGSGAARSCKGAANQFAAGSGKNECKLGAWNMGL
VPKPSHASSISSESKDGLNNWKNLSNPDGAGLGLTLNPNINPSAWPVLGQEGNSGKGTLE
TDVSSSSAQLSAVGQSPRDQDGTSASAWANKSKTENAGVTWNASVGEQPQALNTDGPNNG
DTNSLNANSQSTGNPLQNKGVSDTTGNGTWNMPMGMGLGNPLVLNQSVSTEASSEGSIRG
TMEGRGTGGSWNTVWGSSGTDSISGQNGTGADGNSGRNSDDTAKAGSGLKQLLVNRSRTE
SWDSNSGSWDSEAQDPNKAKNWGKGNRTASGGAQGLWGQQPGTDNRSEGEWSGTPNEQNC
GTGGWDNHRVNPLPENQGENSQNSNWVKASSSTGSDSGSRNNNKRGGSENHPGGRRLNKT
DPLDQEEVIQSVISRSDLDPRVLSNTGWGQTQIKQNTVWDVQESPRNERRTDRGTEGWES
TTTQSTNSGGWGEASSQSSHCNSGWGDAPQSSNMESDSPSGWVDPKNSQGWGGGTPEEKA
PSWNDAPRIKEPGWGARQQPTQGWSPNNGWGDGSGQPAEQPKAGGWDSSNSRWGDSGRGE
VGSWGGGNSNSNQRSGWEDPTRHQGWGEPSKTAASNWNKQQDVSGSWGTNSAGNRQSGPG
WSSASVPPAPIPVVPKEEEPTGWEEPSPQSISRKMEIDDGTSAWGDPNSYNYKNVNLWDK
NSQSESSGSGPAPREQNAANVVTGRGSTSSSGSKAMQDGWGGGDRPTVASTRPPSWEEEE
DGSIGLWNSAGTQESSSPYNSTNWTSSGKKIHKGSMKGGNNDTWINPLSTQFSKMGLLRE
PSEDGVGNKMDLAVVGLSDKKLESDKRGMNMDYNGMMRKDRSGFRPPNSKDSPTADSGPY
FEKLTLPFSNQDGCLSDEAPNSPFSPPPSCKLSPSGTALPTASLGCIGSGLNMQNINARH
NGNHGLFGGSTAQSRGVHTPQVQPMNSSQPNLRAQVPPQFLPPPQVPASMLKHTAPNGAL
NPALFSLGPQLSPQQIAMLSQLPQLPQLQLAYQLLIQQQQQQVLQNQRKLSAAVRQQQEQ
QLARIVSALQQQQQQQQQHRHNTPGMKHSPSHPGIPKQHLDNVVPNSLPSGLPDFQTKGQ
LQPGYPMGLGSNMNVNQLDVNSIVGMKEPQSQQSRLKQWTTMEGLSPATPPPDHNPLKNG
AISSSMAPPKSRDSLPYYEMIAGDSLASHSGPASDNWSTPKLSNGSSSSSWPPEFRPGEP
WKGFQNIDPESDPYATPASMINSSAAPPSPDSEHQLLRDRSTGSSSSLNTSLPSPGAWSY
SASNSSYSTVQSTSAKFNDFKSTWSPDPIGHPRMWKNQMSSKNTNPPTRPPPGLTNQKPP
SSLWGSGAPRFSRGWGVQDSRYALSSNWGDGSSGGSVRVSSWLVLHNLTPQIDGSTLRTI
CMQHGPLITFHLNLTHGTALVRYSTKQEAIKAQTALHMCVLGNTTILAEFVSEEEVNRYF
AQGQLSTPSPGWQTLETGQSQMDPVGSSLHSFGGRSGLGQWNSAGGVGRGSGNLAGASLW
ATPSYTASLWGAPNSDDSHRMGSPAPLLPGDLLGGGADSI
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagacggagattcaggcagaatgtgaggattttacccgagatgaacacgacgaca
catctgaatcccccgtcgaagagagcaaacactagaagagcagcactgaatcccattctt
gcaatatcccacagagagaaggaagaagaaaaggaagaacagttaatggaagaaaagaaa
aggaaaaaagaggacaagaaaaagaaggacgccactcagaaggttacagaacaaaaaacc
aaagtgcccgaagcgacgaagccaagcctaagccagcctccaactgccaccccagttggc
agcgttccaacaccagccgccaacggtggtaacaatgccaaaagggcggtggccaccaac
ggccagccacagaacgccgcccgctatctgccccgtgaggtgcctcctcgatttcgccag
cacgagcacaaagtgttactaaaacgtggtcagccccctccaccttcttgtgggcttctt
ggaggtggggcggggcctcctgggttgccaggatcaaaccctggcgctgcacaaccattg
acgcaatccaactgtccactgcagcacggcagtacaccagtggacgctaaccctgggggt
gctggttcaaattatgcaaattctgcttggggttctggatcgtccagcactgacctcaat
cacggctgggataagttaatcgtagacgggtctgatatggaggcttggccttgcatcaca
ggcagggactctgagtcagcttcggaacacgtagacaacgaaggtgcctcaaactttggc
tccgagaagagcctgccaccaggaagtggcgctgccaggagctgcaaaggagctgcaaac
cagttcgctgctgggagcggaaagaatgaatgtaaattgggggcctggaacatgggcctc
gtgcctaaacccagtcatgcatcttccatctcttcggagagcaaagacggacttaacaat
tggaaaaacttgagcaaccctgatggagctggccttgggttgactttgaacccaaatatc
aacccatcagcctggccagtgttgggtcaggagggcaattctggaaaagggactttggag
actgatgtttcaagctccagtgcacaactcagtgcagtaggtcaaagccctagggatcag
gatggtacttctgcaagcgcctgggcaaataagtcaaaaacggaaaatgcgggtgttaca
tggaatgcttctgttggagaacagcctcaagctcttaacactgatggaccaaataatggc
gacactaactctttgaatgcaaactcacagagcaccgggaaccctttgcaaaataaggga
gtgtctgatacaacaggaaatgggacctggaacatgcccatgggaatgggtttgggaaac
cccttggtattgaatcagtctgtgagcactgaagcctcatccgaaggcagtattagagga
actatggagggacggggaactgggggatcttggaatacagtttggggatcttctggaact
gattcaatatctggacaaaatggtacaggagctgatggcaatagtggacgcaacagtgat
gatacagcaaaggctggctctggtttgaaacagttactggtgaatagatcaagaactgaa
tcatgggatagtaatagtggatcttgggactctgaggcgcaagaccccaacaaagcaaaa
aattggggcaaagggaacagaacagcatcaggtggtgctcagggcttgtgggggcaacag
ccagggactgataatcgctcagaaggggagtggagtggcactcctaatgaacagaattgt
ggcacaggcggttgggacaatcatagggtaaatcccctcccagaaaaccaaggagagaac
tcccaaaattccaactgggtgaaggcctctagttccactgggagtgattctggtagtcga
aataacaacaaaagggggggctcagaaaaccacccaggaggacggcgcttaaacaagact
gatccccttgaccaggaggaggtaatacagtctgtgataagtaggtctgatctggatcct
agagtgttgtcaaatactgggtggggccaaactcaaattaaacagaacacagtctgggat
gtgcaggagtcaccaaggaatgagaggcgtactgacagaggaacagaagggtgggagagc
accaccactcagagcactaactcagggggctggggtgaagcatccagtcagagcagtcac
tgcaactctgggtggggagatgctccacagtcttcaaacatggagtctgatagtccaagt
ggatgggtggacccaaaaaatagtcaaggttggggaggtggaacaccagaagagaaagca
ccatcatggaatgatgcgcctaggatcaaggaacctggttggggtgcaagacagcaacca
actcaaggttggtcccccaacaatggttggggtgacggaagtggacaaccagctgaacaa
ccaaaagcaggtggatgggacagttcaaactccaggtggggcgatagtggacgtggtgaa
gtaggatcttggggtggtggtaactctaattcaaaccagagaagtgggtgggaggatcca
acacgacaccagggatggggtgagccatcaaaaacagctgccagtaattggaataaacaa
caagatgtctctggctcttggggcacaaactctgcagggaatcggcaatcaggacctggc
tggagctcagcctctgtgccacctgcacccatcccagttgtgccaaaggaagaagaacct
actggatgggaagaaccttcaccacagtccatctcccgaaaaatggagatcgatgatggc
acctcagcctggggtgatcccaacagctacaactataagaatgtgaatctgtgggacaag
aactcccaaagtgagagctctggaagtggaccggcgccacgggagcagaatgcagccaat
gtggttacagggcgaggttccacatcaagttctggttcaaaagctatgcaagatggatgg
ggtggtggtgatcgacctactgtggcaagtacccgccccccaagctgggaagaagaagaa
gatggttcaattggcctgtggaatagtgctggaactcaggagagtagttcaccctacaac
tcaactaactggacctcgagtggaaagaaaattcataagggctccatgaaaggtggaaac
aatgacacatggataaaccctctctctacgcaattttccaaaatgggattactgagggag
ccttcagaagatggtgttggtaacaaaatggacttagctgttgttggtctatctgacaaa
aagctggaatctgacaaacgtggaatgaacatggattacaatggaatgatgaggaaggat
cgatcaggattccggccaccaaattccaaagactcgcccactgcagacagtggaccctat
tttgagaagctgactttgcctttctccaatcaagatgggtgcctgtctgatgaggcacct
aactcgcccttctcccctcctccgagctgcaagctgtctccctcgggcactgctctaccc
accgccagcctcggctgcatcggctctggtcttaacatgcaaaatataaacgctagacac
aatggcaatcatggtttatttggcggtagcacagcacaatctaggggtgtgcatacacct
caagtgcaacccatgaattcatcccagcctaaccttcgagctcaagtgcctccacaattc
ctaccccctcctcaggttcctgcctccatgttgaagcatactgctccgaatggtgccctg
aacccagccctatttagccttggtcctcaattatcccctcaacaaatagctatgctcagt
caacttcctcaactcccacagctccaattggcttatcagctcttgattcagcaacaacag
cagcaagtgctgcagaaccaacgaaagctctccgctgctgtccgacaacagcaagagcag
cagcttgcccgtattgtaagtgctctgcagcagcagcagcagcaacagcaacaacaccga
cataacacccctgggatgaaacactcaccgtcgcaccctggcatacccaagcagcacctg
gataacgttgtgcctaattctcttccctctggccttccagacttccagaccaaaggacag
cttcagccgggttacccaatgggtctgggttcaaatatgaacgtaaaccaattagacgtc
aacagtattgtaggaatgaaggaacctcagtcccagcaatctcggcttaagcaatggaca
actatggagggtctttcaccagccactccgccacccgatcacaaccccctcaaaaacggt
gctatttcgagcagcatggcaccaccaaagtctcgagatagtttgccctattatgaaatg
atagctggtgactctttggccagtcattcgggtcctgcaagtgataactggtccaccccg
aagctctcaaatggttccagcagctccagttggcctccagaattccgtcctggggagcca
tggaagggttttcaaaacattgaccctgaatcagatccgtacgcgacgccagcgagcatg
ataaacagctctgcagcacccccatccccggactcagaacaccaacttctcagggacagg
agcacagggtccagttcctccctgaacacctcgctgccttcacccggtgcctggtcctat
agtgcctcaaacagctcctacagcaccgtacagagcacttcagccaagttcaacgacttc
aagtcaacgtggtctccagatccaatcggacatcccaggatgtggaagaatcagatgtca
tctaaaaacactaacccaccaacccggccaccacctggattgaccaatcagaagcccccg
tcatctctttggggtagtggtgcaccccgtttcagcagagggtggggtgtgcaggactcg
cgatatgccctgagttcaaactggggtgatggcagttcgggtggatctgttcgggtcagc
tcctggcttgttcttcataatctcactccacagatcgatggctccaccctgcgaacaatc
tgcatgcagcatggcccgctgataacattccacctgaacctgacacacggcactgcactg
gtccgatacagcaccaagcaagaggctatcaaggcccagactgcgctgcacatgtgtgtg
ttggggaacactaccatccttgctgagtttgtcagtgaagaggaagtcaaccgctatttt
gcacaaggtcagttatcaacaccatccccaggctggcagacactggagacaggacagagc
cagatggatccagttgggagcagccttcactcgtttggcgggcggtctggcctgggacag
tggaacagtgccggaggagtgggcaggggtagcgggaacctggcaggagcctcactttgg
gcaaccccaagctacacggcaagcttgtggggagccccgaattccgatgattcgcaccga
atgggcagtccggcccccctactacctggtgacctcctgggcggaggggctgattcaatt
tga
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