Chiloscyllium plagiosum (whitespotted bambooshark): 122542344
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Entry
122542344 CDS
T08871
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122542344
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122542344
Spliceosome [BR:
cpla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122542344
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122542344
NCBI-ProteinID:
XP_043535957
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All DBs
Position
39:22787261..22832262
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AA seq
695 aa
AA seq
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MRGFGGDRDRGRDRGSNGPRFGGGPSRGGPSLGKKFGQPGERLRKKKWDLDELPKFEKNF
YVEHPEVVRLSPYDVEDFRRKKEITTKGTDCPKPVFQFHQANFPSYVMDVLCSLNFVEPT
PIQCQGFPVALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQLVAEDYGKSSRIKSTCIYGGAPKGPQIRDLERGVEVCIATPGRLIDFLEAGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLRDYI
QINVGALELSANHNILQIVDVCQETEKDLKLLHLMEEIMAEKENKTIIFVETKRRCDDLT
RRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDIKFVINYDY
PNSSEDYVHRIGRTARSTNKGTAYTFFTPGNVKQARELIKVLEEANQAINPKLLQLVDHG
RGSGRGGRSRYRPTGSNPNTMYRDDRDRGRSRAFRDLDGDRRDRGDGGRFGSQRDTRDSG
GPLSKQSFRSAQTNSFGTPVYGQQSVQYPNFTQSGLYGGTNQGTYGAVTQAGFGKTGTFQ
SSSAGSSYSTSGYGTAAQSTAYGSSNYSASSTAAAGRTPQSSAQFRQNGMGQQPQPLMSQ
TYQQSNSLLSYMSQGTYQFAPPPPPPPTSQGSSRK
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgagaggattcggtggagaccgtgaccgcggtagagaccgagggagcaatggcccacgg
tttggtggagggccgagccgtgggggtccttcccttgggaaaaaatttggacagcccgga
gaacgcttgaggaagaagaagtgggacctggacgagttgcctaaatttgagaaaaacttc
tacgtggagcaccccgaagtggttcgattaagcccgtatgatgtcgaagacttccgcaga
aagaaagaaattacaacaaaaggaacagactgcccaaaaccagtgttccagtttcaccaa
gcaaacttcccttcctatgtgatggatgttctgtgttcactgaattttgtggagccgaca
ccaatccagtgccagggctttccagtggcacttagtgggcgtgacatggtcggaattgca
cagactggatctggcaaaacgctggcttacttactgccagccattgtgcacatcaaccac
cagccattcctggagcgtggcgatggtcccatttgcttggtattggcaccaactcgagaa
ctagcacaacaggttcagctggttgcagaagactatggaaaatcttcacgtataaagagc
acttgtatttatggaggggcacctaaaggccctcagattagggacctagagagaggagta
gaagtctgtattgcaaccccaggccgtctaattgactttctagaagctgggaagacaaat
ctgcgtcgatgtacttacctggtcctggacgaagctgaccgcatgttagatatggggttt
gaacctcagatccggaagattgtggagcagatccggccggaccgacaaaccctgatgtgg
agtgctacttggcctaaagaggtgcggcagctagcagaggatttcctgcgtgattatatc
cagatcaatgttggagccctggagctgagtgcgaaccacaatattctccaaattgttgat
gtgtgtcaggagactgagaaggatctgaaattgctacatctgatggaggaaatcatggca
gagaaagaaaataagaccatcatctttgtagagaccaaacgtcgctgtgacgatctgact
cggagaatgcggagagacgggtggccagcaatgtgcattcatggagataaaagtcagcct
gagagagactgggtcctaaatgaattccgatccggaaaggcaccaatccttattgcaact
gatgttgcatctcgaggtctagatgtggaagacatcaaatttgtcatcaattacgactat
cccaattcctctgaggactatgtacatcgcattggccgtacagcacgcagtactaataaa
ggcacggcctacaccttcttcacaccaggcaatgtgaaacaagctagggagctgatcaaa
gtgctggaagaggccaatcaagccattaacccaaaactcttacaacttgttgatcatggg
agaggaagcggaagaggaggccgctctcgttaccggcccactggctccaaccctaacacc
atgtacagagacgatcgtgacagaggccgcagccgggcttttagagacctcgatggggat
cgcagagacaggggagatgggggcaggttcgggagccagagagatacccgagacagtggc
ggtccattgagtaagcagagtttccgatctgcacagaccaacagttttgggacccctgtg
tatggccaacagtcagtccagtatccaaattttacccaaagtgggctgtacggggggact
aaccaaggcacatatggggctgtaactcaagcaggatttgggaaaacgggtaccttccaa
agttcaagtgcagggagcagttacagtacctccggttatggtactgctgcccaaagcacg
gcttatggttcaagtaattatagtgcttcatccactgccgctgcagggcgaaccccacag
tcctctgcgcaattcaggcagaatgggatggggcagcagccacagccactgatgtctcaa
acatatcaacagagcaactcactgttgagttacatgtcccaggggacctatcaatttgca
ccacctcccccaccaccacctacatcacagggatcaagccgaaaataa
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