Chiloscyllium plagiosum (whitespotted bambooshark): 122542890
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Entry
122542890 CDS
T08871
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122542890 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122542890 (supt5h)
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122542890 (supt5h)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122542890 (supt5h)
RNA polymerase I system
122542890 (supt5h)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
122542890 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
122542890
NCBI-ProteinID:
XP_043536950
LinkDB
All DBs
Position
41:16096376..16177675
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AA seq
1113 aa
AA seq
DB search
MSDSDGSNFTDDESSHSSEAEEQEDIEEEEELASRGSEKAEVEGEIEEAEEAEEEEEEEE
EEEEEEEEEEEYDEEDDDRPKKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILDKEEIE
ASNIDNLVLDEDHSGARRLLNHWRDKREEELGEYYMNKYAKPTAGDHFYGASDELSDDIT
QQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFVAYQFTDSPIQIKSVVSPEHVKGYIY
VEAYKQTHVKQAIEGVGNLRIGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLY
KDDIAQVDYVEPSQNTISLKLIPRIDHERIKARMSLKDWFAKRKRFKRPLQRLFDAEKIR
SLGGDVTTDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLE
VVTESTGKEREHNLQPGDNVEVCEGELINLQGKILSVEGNKITILPKHEDLKDPLEFPAH
ELRKYFKMGDHVKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETAS
GVDAGGQHEWGELVQLDPQTMGVIVRLERETFQVLNMYGKVITVRHQAITRKKDNRFAVA
LDSEQNNIHVKDIVKVIDGPHSGREGEIRHLYRGFAFLHCKKLVENGGMFVCKTRHLVLA
GGAKPRDVTNFTVSGFAPMSPRISSPMHPSGGAPRGGFGGQGGMGRGRGRRDNDLIGQTV
RISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVDSKKKGGLTSAYSRTPM
YGSQTPMYGSGSRTPMYGSQTPLHDGSRTPHYGSQTPVHDGSRTPGQSGAWDPNNPNTPS
RNDDEYDFPYDDEPTPSPQAYGGTPNPQTPGYTDVPSPQVNPQYNPQTPGTPAMYSTDQF
SPYAAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGY
SPMTPGAPSPGAYNPHTPGSSIDQGSNDWVTTDIMVKVRDTYLDAQIIGQTGVIRSVSGG
LCSVYLSDTDKVVSISSEHLEPVTPMKSDKVKVILGEDREATGMLLSIDGEDGIVRMELD
DQLKILNLRFLGILSEEGALSTTPSGKDVYSRK
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatagcgatggtagcaacttcaccgatgatgagagttcccacagcagtgaggca
gaggagcaagaggatattgaggaggaggaagagcttgccagtaggggcagtgagaaagca
gaggtagaaggtgagatagaggaagcggaagaagctgaagaagaggaggaggaagaagag
gaggaggaggaggaagaggaagaagaggaagagtatgatgaagaagatgatgaccgaccc
aagaagaagccacgacatggaggattcatcttggatgaagctgatgtggacgatgagtat
gaagatgaagatcagtgggaggatggagctgaggatatccttgataaagaagaaattgaa
gcctccaacattgacaacttggtccttgatgaagatcactccggggcaagacgattgctg
aaccattggagagacaaaagagaagaggaacttggcgaatattatatgaataaatatgcc
aagccaactgcaggagatcatttctatggtgcatcagatgaactctcagacgacatcaca
caacagcagttactgcctggtgtaaaagatcctaacttgtggactgtgaaatgtaagatc
ggtgaagaacgagcaacagctatttcactgatgaggaaatttgtcgcttatcagtttaca
gattcacccatccagatcaagtctgttgtttcccctgagcatgtgaaggggtacatttat
gttgaggcatacaaacagactcatgtcaagcaggccattgagggtgtggggaacctccgg
atagggtactggaaccaacagatggttcctatcaaggaaatgacagacgtgctgaaggtg
gtgaaggaggtgaccaacctgaaaccgaaatcctgggttcgtctgaaaagaggtctgtac
aaggatgacattgcacaggtggactacgttgagccaagccagaacaccatttctctgaaa
ctgatcccaagaattgaccatgagcgaatcaaagctcggatgagtttgaaagactggttt
gctaaaaggaagagattcaagaggccacttcagcgattgtttgatgcagagaaaatcaga
tcactgggtggagacgttaccacagatggagactttcttatatttgagggcaatcgctac
agcaggaaaggattcttgttcaaaagttttgcaatgtctgcagtgattactgaaggagtt
aagcccacactttctgagcttgaaaaatttgaggatcaaccagaaggcattgacctggag
gttgtgaccgaatcaacaggcaaagaaagagaacacaacttgcaacctggagataacgta
gaagtttgcgaaggtgaattgataaacctgcagggtaaaattttgagtgtggagggcaac
aagatcacaattttacccaaacacgaagatctgaaggatcctttagagtttccagctcat
gaattgcgcaagtacttcaaaatgggagaccatgtgaaagtgatagcagggcgatatgag
ggagatacgggactgattgtacgagtggaagagaactttgtcattcttttttcggatcta
accatgcatgagctgaaagtgctcccaagagatttgcaactatgctcagagactgcatct
ggagttgatgctggaggtcagcatgagtggggtgaactggtccaacttgacccacagact
atgggagttattgtccggctggagagggagacattccaggttcttaatatgtatggaaaa
gtcattactgtacggcatcaagcaataactcggaagaaagataaccgttttgctgtggcc
ctggattctgagcaaaataatattcacgtgaaagatattgttaaagttattgatggacca
cactcgggtcgtgagggtgagatcagacacttgtatcgtggctttgcatttctacattgt
aagaaattggtggaaaatggcggtatgtttgtttgtaaaacccgacacttggtacttgct
ggaggcgcaaagccaagggatgtaacaaatttcacagtgagtggttttgccccaatgagc
ccccggatcagcagtccaatgcatcccagtggtggagcccctcgaggtgggtttggagga
caggggggaatgggccgtggtcgaggtcgtagagataatgacctgattggacaaacggtg
cgcatttcacaaggaccatacaaaggttacataggtgtggtaaaggatgcaacagaatcc
acagctcgtgtagaacttcattccacctgccagaccatttctgtagatcgccagcgcctc
actacagtggactcaaagaagaagggtggcttgacatctgcttacagtcgtactccaatg
tatggttcccagaccccaatgtatggctcaggatcacggacacccatgtatggctctcag
acacctttacatgatggaagtcgaactccacattacggttcccaaacgccggttcatgat
gggagcagaactccagggcaaagtggggcttgggatccaaacaatcccaacacaccatcc
aggaatgatgatgagtatgatttcccttatgatgatgagcccaccccatctccacaggcc
tatggtggaacacccaacccacaaactccaggctacacagacgtgccatctccacaggtt
aacccccaatataaccctcaaacacccggaacaccagcaatgtacagcacagaccaattt
tctccatatgcggctccatcgcctcaaggatcttaccagcccagccccagtccacaaagc
tatcaccaggttgcaccaagtcctgtgggctaccagaatactcactcacctgccagctat
cacccaacaccatcaccaatggcgtaccaggcaagcccaagtccaagccctgttggttat
agtccaatgacacctggggccccatctcccggtgcatacaatcctcacacaccaggttcc
agcattgatcaggggtccaatgactgggtaacaactgacatcatggttaaagtacgggac
acctatttggatgcgcagatcataggacagactggagtgatccgcagcgtgtcgggtggc
ctttgctctgtgtatctgtctgacactgacaaagtagtcagcatctcaagtgaacatctt
gaacctgtcacccctatgaaaagtgataaggtgaaggtgattctaggtgaagatcgggaa
gccacaggtatgctgctcagtattgatggtgaggatggaattgttcgaatggaactggat
gaccagctgaagattctcaacctgaggtttcttgggatcctcagtgaagaaggggcattg
agtacaacaccctctggcaaagatgtatatagtcgaaagtaa
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integrated database retrieval system
