Chiloscyllium plagiosum (whitespotted bambooshark): 122543081
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Entry
122543081 CDS
T08871
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122543081 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122543081 (snrnp200)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122543081 (snrnp200)
Spliceosome [BR:
cpla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122543081 (snrnp200)
Complex C
U5 SnRNP specific factors
122543081 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DrmE_N
Motif
Other DBs
NCBI-GeneID:
122543081
NCBI-ProteinID:
XP_043537248
LinkDB
All DBs
Position
42:9588078..9635285
Genome browser
AA seq
2138 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGSRMGDKAQRTK
PQLQEERRAKRRKRDEDRHDMNKMKGYTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKLRDKERRKEIEMLLGQLEDTRYHVLVNLGKKIS
DYGGDKEVQNMDDNIDETYGVNVQFESDEEEGDEDAFGEVREEASDEDTEGEEADISCTL
SANLGAAGDVLSAKKKDLHPRDIDAFWLQRQLSRFYDDAIMSQKKADEVLDILKTAGDDR
ECENQLVLLLGFNTFDFIKILRQHRMMILYCTLLASAQSEAEKERIQNKMEADAELSKVL
YKLQETEKEDIIREERSRRERVRQSRVDTDLEAMDLDRDGEILAPRQVLDLEDLAFAQGS
HLMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFSSDEQLISVEKMPKYTQAAFEGFKT
LNRIQSKLCKAAMETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFSKRLASYGISVAELTGDHQLCKEEITATQVIVCTPEKWDIITRKG
GERTYTQIVRLMIIDEIHLLHDDRGPVLEALVARTIRNIEMTQEDVRLIGLSATLPNYED
VATLLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKVMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
SFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDVLQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMITRLPDM
LNAEIVLGNVQTAKDAINWLGYTYLYIRMLRTPTLYGISHDELKTDPLLEQRRLDLIHTA
AIILDKNNLVKYDKKGGNFQVTDLGRIASHYYITHESMATYNQLLKPTLSEIELFRVFSL
SSEFKNISVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMAD
MVYVTQSAGRLMRCIFEIVLNRGWAQLTDKTVNLCKMIDKRMWQSMSPLRQFRKLPEEVI
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYIHQFPKLELSVHIQPITRSTLKV
ELTITPDFQWDEKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVMFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFEHL
YQDKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYADWYEKFQQKLSKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSTTATFNFHPNVRPVPLELHIQGFNISHTQTRLLSMSKPVYHAIMKHSPKKPVI
VFVPSRKQTRLTAIDILTFCAADVQPQRFLHCTEKDLVPYLEKLNDNTLKETLANGVGYL
HEGLNLAERRIVEQLFRSGAVQVVVASRSLCWGMNISSHLVTIMDTQYYNGKIHAYVDYP
IYDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSQLVENTLNDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYENIPI
RHHEDNLLRQLYQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHVKRCTDRGTD
SIFDIMEMEDDERNALLQLSDAQMMDVARFCNRYPNIELSYEVIDRENIKSGSSVVVMVQ
LEREEEVTGPVIAPLFPQKREEGWWVVVGDPKTNSLISIKRLTLQQKAKVKLDFLAPAPS
TQHYTLYFMSDAYMGCDQEYKFNIDVKEADSEGESDSD
NT seq
6417 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgactgctcgtagcctgcaatatgagtacaaagcgaattccaaccttgta
ttgcaagcagatcgttcattgatcgaccgaacaagacgagatgaacccacaggagaagtg
ctgtctctggttggaaagcttgaagggtcccgaatgggagacaaagctcagagaacaaaa
ccacagttgcaggaagaaaggcgagcaaagaggagaaagcgtgatgaagaccgacatgat
atgaacaaaatgaaaggatacactttgttgtcagagggtattgatgagatggttggaatt
gtgtacaaacccaaaacgaaggagaccagagagacctatgaggtgctgctcagtttcatt
caggctgcacttggtgaccagccacgtgatattctctgtggagcggcagatgaggtcctc
gctgtgctgaaaaatgataaactgcgtgacaaagagcgacggaaggaaatagaaatgctc
ttgggacagttggaggatacccgttaccatgtactggtaaaccttggaaagaaaatcagt
gactacggaggagacaaagaagtgcagaatatggatgataacattgacgagacatatgga
gtgaatgtacagttcgagtctgacgaagaggaaggtgatgaggatgcatttggtgaagta
cgtgaagaagcatcagatgaggacacggagggcgaggaagctgacatcagctgcacactt
tcagcaaatctgggtgctgctggagatgtactgagtgcaaagaagaaagacctgcatcct
cgagatattgatgctttttggctccagaggcagctcagccgcttctacgatgacgctatt
atgtcacagaaaaaggcagatgaagtcctggatatcctcaagacagctggtgatgaccgt
gaatgtgagaatcagcttgttttgcttcttggcttcaacacttttgacttcatcaagatt
ctaaggcagcatcgcatgatgattttgtactgtacactgttggccagtgctcagagtgag
gcagagaaggagaggattcagaataagatggaggcagatgcagagctttccaaagttctc
tacaaactgcaagagactgaaaaagaggacataattcgggaggaaagatcccgaagagaa
cgagttcgtcaatcccgtgtggatacagacctcgaagcaatggaccttgatcgagatgga
gagattctggctcccagacaggttctggatttggaggatctggcctttgcacaggggagt
catctaatggcaaacaagcgatgtcagctaccagacggttcattccgcaagcaacgcaag
gggtacgaggaggtgcatgtgccagctcttaaaccgaagccattcagctcagatgagcaa
ctgatatctgtagagaagatgcctaagtacacgcaagcagcatttgagggcttcaaaaca
ctgaatcggattcaaagtaagctgtgcaaagcagccatggaaaccgatgagaatctgcta
ttgtgtgctcccactggtgccggcaagaccaatgtggctctgatgtgcatgttacgtgag
attgggaaacacattaatatggatggaaccattaatgtcgatgacttcaagattatttac
attgcaccgatgagatcactggttcaggagatggtgggcagtttcagtaagcgtttagca
agctatgggatcagtgtcgcagagctgacaggggaccatcaactgtgcaaagaggagatc
actgcaacccaggtgattgtgtgcaccccagagaagtgggacatcattactcgcaaggga
ggagagcgtacttatactcaaattgtgcgactcatgataattgatgagattcatctcctg
catgacgatcgcggtccagtattagaggccttagttgccaggacaattaggaacattgaa
atgactcaagaagatgtgcgattgattgggttgagtgccacgctgcctaattatgaagat
gttgcaactcttctgcgagttgatccagctaaaggtcttttctattttgacaacagtttt
cgtcctgttccactggagcagacatatgttggaataactgaaaagaaagcaatcaaacgt
ttccagattatgaatgagattgtgtatgagaaagtgatggagcacgctggaaagaatcag
gtgctggtgtttgttcactcccgtaaagagacaggaaaaacagcgcgtgcaatccgagat
atgtgtctggagaaagacacgttgggtttgttcctgcgagagggatcagcctccacagaa
gtgttacggacagaggcggagcagtgtaagaatctggagctgaaggacctgcttccctac
agttttgctattcaccatgctggtatgaccagagtggatcgaacgctagtggaagattta
tttgctgacagacacattcaggtgctggtctcgacagcaactctggcctggggtgtcaat
ctgcctgcgcacacagttattatcaaagggacacaggtatacagcccagagaagggacgc
tggacagagttgggtgcactggatgtacttcagatgttaggccgtgcaggacgaccgcag
tacgacacaaaaggtgagggaatccttatcacatcacatggtgagctgcagtattaccta
tcccttctcaaccagcagctccccattgaaagtcagatgatcacaagactccctgacatg
ctcaatgctgagattgtccttggaaatgtccagactgcaaaggatgcaattaactggttg
gggtatacatatctctatattcgcatgttgcgaaccccaacactctatgggatctcgcat
gatgagctgaagactgaccccctactggagcagcgcagactggaccttatccacactgct
gccattatccttgacaaaaataaccttgtgaaatatgacaaaaagggtggcaacttccag
gtgactgacctcggccggattgcaagtcactattacatcacacatgaaagtatggccacc
tacaatcagcttttgaaacctaccctgagtgaaatcgagctcttccgagtattttcactg
tcttctgagttcaagaacatcagcgtgagagaggaggagaaacttgagttgcagaaattg
ttggaacgagttcccattcctgtcaaagagagtattgaggagccgagtgcgaagatcaat
gtgttgcttcaagcctacatttcccagctgaagctggagggatttgcactcatggctgat
atggtctatgtgactcagtctgcaggccgtctgatgcgttgtatatttgagatcgtcctt
aatcgaggctgggctcagttgacagacaagactgtcaatctctgcaaaatgattgataaa
cgaatgtggcaatctatgtcacctctgcgacagttcaggaagctgccagaagaagtgata
aagaagatagagaagaagaattttccatttgagcgactctatgacttgaatcataatgaa
ataggagagttgatccgaatgccaaagatgggcaagacaatacacaagtacattcaccaa
ttcccaaaacttgaactgtctgttcacatccagcccatcacacgctcaacactgaaagtg
gaactgacaatcacacctgatttccagtgggatgagaagatacatggatcctctgaggca
ttctggatcctggttgaggatgtagacagtgaagttatcttgcaccatgagtattttctg
ttgaaggcaaaatatgctcaagatgaacatttggtgatgttctttgtaccagtatttgaa
cctctccctccacaatatttcatcagagtggtgtcagaccgttggctctcctgtgagact
caacttccagtttcattccggcacctgatacttccagaaaagtatcctccccccacagaa
ctactggacttgcagccactgccagtgtcagcattgaggaacagtgcgtttgaacatctc
taccaggataaattccctttcttcaacccaatccagacacaagtcttcaatgcagtttat
aacagtgatgacaacgtgtttgtgggagctcccacgggtagcgggaagacaatttgtgca
gagtttgcaatccttcgaatgcttctgcagaactctgaaggacgctgtgtgtacataact
ccaatggaggccttggctgagcaggtttatgcagattggtatgagaaatttcagcagaag
ctcagcaagaaagttgtgttactgacaggcgagacgagcaccgacctcaaactgttgggc
aagggaaatatcatcatcagcacaccggagaaatgggacatcctgtcccgacgatggaag
cagaggaaaaatgtccaaaatgtaaacctgtttgtcgtggatgaggttcacttgattggt
ggagagaatgggcctgttttggaagttatctgctcccgaatgcgatacatctcctcccag
attgagcggccaattaggattgtggctttaagttcatcgctgtccaatgcgaaggatgtg
gctcattggcttggctgtagcaccactgcaactttcaactttcaccccaacgtgcggcca
gtacctctggaactacacattcagggcttcaatattagccacacgcagactcgccttctg
tccatgtctaaacctgtctaccatgccatcatgaagcactctcccaagaaaccagtcatt
gtctttgtgccctctcgcaagcaaacaaggttgactgccattgatatccttacgttctgt
gctgctgatgtccagccacaaaggtttctacactgcacagaaaaagacttggttccatac
cttgaaaaactaaacgacaacactttaaaggagacccttgcaaatggagttggttatctg
catgaggggctcaatctggctgagcgcagaattgtggaacaactcttccgctctggtgca
gtgcaagtggtagttgcctcaaggagtctctgttggggaatgaatatctcctctcacctt
gtaaccatcatggacacccagtattataacggcaaaattcatgcgtatgtggattaccct
atttatgatgttctgcaaatggttgggcgagctaatcgtcccttacaagatgatgaaggg
cgatgtgtcattatgtgccaagggtcaaagaaggatttcttcaagaagtttctttatgag
ccactgccagtggagtcccaccttgaccattgcctacatgatcatttcaatgctgaaatc
gttacaaaaaccatagagaacaagcaggatgcagtggattacctgacctggaccttcctt
taccgtaggatgacccagaatccaaattactataatttgcagggtgtgtcccacagacat
ctttcagatcatctttcacagttggtagaaaatactctgaatgacttagaacaatccaag
tgcatcagcattgaggatgagatggatgtggcaccattgaatcttggaatgattgcagct
tactactatatcaattacaccacaattgagctgtttagtatgtcactgaatgccaaaacg
aagatccgaggtctgattgagatcatctccaacgccgcagagtatgaaaatattcccatt
aggcaccatgaagataacctgctgcgacagttgtatcagaaggtccctcacaagcttaac
aacccaaaattcaatgaccctcacgtgaagacaaacttgctccttcaggcacacctttcc
cgtatgcaactgagcgccgaactacagtccgacacagaagagatcctcagtaaggcaatt
cgtttaatccaagcttgtgtggatgtgctgtccagtaatggctggctcagcccagctctg
gccgcaatggaacttgcccagatggtgacccaggcgatgtggtccaaggactcatatttg
aagcagcttccacatttcacttctgaacatgtcaaacgctgtactgacagggggactgac
agtatctttgacatcatggaaatggaggatgatgaacgcaatgcactgctgcaactctct
gatgcacagatgatggatgttgcccggttctgtaaccggtatcccaacattgagctttcc
tatgaggtgattgacagggaaaatatcaagagtggctcctcagtcgtagtgatggtacag
ttggagcgtgaggaggaggtgactggacctgtcattgcacccttattccctcagaaacgg
gaggaaggttggtgggtggtggttggagaccccaagacgaacagcctgatatccatcaaa
agactgaccttacagcagaaggcaaaggtaaaacttgattttcttgcaccagctccaagt
acccaacattacacgctgtatttcatgagtgatgcgtatatgggctgtgatcaggagtac
aaattcaatattgatgtcaaggaagctgacagtgaaggtgaaagtgactctgactaa
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integrated database retrieval system
