Chiloscyllium plagiosum (whitespotted bambooshark): 122543293
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Entry
122543293 CDS
T08871
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122543293 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122543293 (smarcd1)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122543293 (smarcd1)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122543293 (smarcd1)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122543293 (smarcd1)
PBAF complex
122543293 (smarcd1)
GBAF(ncBAF) complex
122543293 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
DivIC
Motif
Other DBs
NCBI-GeneID:
122543293
NCBI-ProteinID:
XP_043537734
LinkDB
All DBs
Position
43:complement(2867932..2919122)
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AA seq
513 aa
AA seq
DB search
MAARGFQTMSPGAAAAMAAGPGPGQGQGPGQAPGRIAGAQQQNMFRSAMPGQGYPRPGMP
PGSRMPPQGASMGPPGPSYGGSPAVRPGMPQSMMDQSRKRPAPQQIQQVQQQAAQNRNHN
AKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKL
RIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDSAVSKYDATKQKRKFSSFFKSLVI
ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA
RLLGIHTQTRPVIIQALWQYIKTHKLQDSHEREFINCDKYLQQIFECQRMKFSEIPQRLH
ALLMPPEPIIINHIISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDN
KIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKSMTDVVGNPEEERRAEFY
FQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgaggattccagacaatgagcccgggcgcggcggctgctatggcagcgggt
ccggggcctggccaggggcaagggccggggcaggccccgggcaggatagcaggagctcag
caacagaacatgtttcgctcggccatgccaggccagggatacccgcgcccagggatgcct
ccaggcagccgcatgccacctcagggtgcttctatgggtccgcctggtccttcgtatggg
gggagcccagctgtgcgaccaggaatgcctcagtcaatgatggaccagtctcgcaaacgg
ccagcacctcagcaaattcaacaagtgcagcagcaagcagcccaaaaccgcaatcacaat
gcaaagaagaagaagatggctgataaaattctacctcagaggattcgggaacttgtgcca
gagtctcaagcctacatggatttgctggcgtttgagaggaagttggaccagactataatg
aggaagcgcctggacatccaggaagcactgaaaagaccaataaagcaaaagcgaaagctt
cgtatatttatttctaatacattcaaccctgccaaaccagatgcagaagatggcgaagga
actgtggcatcctgggagcttcgggtggaaggcaggcttctcgaggattcagctgtatca
aaatatgatgctactaaacagaagcggaagttttcctcattcttcaaatcccttgtgatt
gaactagataaagatctctatggacctgacaaccacctggttgagtggcacaggacggcc
acaacccaagagactgatggcttccaggtgaaaagaccaggagatgtgaatgtgcgctgc
actgtgttactgatgctagattaccagccaccccagtttaaattggatccgcgactggca
cgtctgctgggcatccacactcagacccggcctgtcatcatccaggctctctggcagtac
attaaaacacacaagctgcaggattcccatgagcgggagttcatcaactgtgacaaatac
ctccagcagatctttgaatgccagcgaatgaagttctcagaaatccctcagagactacat
gctctgttgatgccacctgagcccatcatcatcaaccatattatcagtgtggacccaaat
gatcagaagaagactgcatgttatgacattgatgttgaagtggacgacacactaaagact
cagatgaattcatttctcctttctactgctagccagcaggaaattgctgctctcgataat
aagatccatgaaacaatagagaccattaaccagctcaagacacagagggagttcatgttg
agttttgccagagatccacagggcttcatcaatgactggttgcagtcccagtgccgtgac
ctgaagtctatgactgatgtggtaggaaacccagaggaggagcgcagagcagagttctac
ttccagccctgggctcaagaagctgtttgcagatacttctattctaaggtgcagcagaga
agacaggagcttgaacaagctcttggcatccgtaatacataa
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