Chiloscyllium plagiosum (whitespotted bambooshark): 122543813
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Entry
122543813 CDS
T08871
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04120
Ubiquitin mediated proteolysis
cpla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122543813 (syvn1)
04120 Ubiquitin mediated proteolysis
122543813 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpla04121
]
122543813 (syvn1)
Enzymes [BR:
cpla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122543813 (syvn1)
Ubiquitin system [BR:
cpla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122543813 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-HC5HC2H
zf-Nse
zf-RING_Vps41
Endonuclease_7
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
122543813
NCBI-ProteinID:
XP_043538539
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All DBs
Position
45:2599170..2638176
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AA seq
623 aa
AA seq
DB search
MVRSTLATAASLVLTTTVVTHAYYLKRQFYPTVVYLTKSSPSMAVLYIQAFVLVFLIGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWLFHFRVVSLMGLLALLDLLFVNHACHSIMTRGASVQLVFGFEYAI
LLTMVLTIFIKYILHTIDLQSENPWDNKAVYMLYTELLTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLTMRQFKKAVTDAIMSRRAIRNMNTLYPDASLEELQQTDNVCIICREEMVT
GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRVTLPTQTPPPQPPQPQVPQTPLVPQ
QPNLPPGMPPFPPGMFPFWPPMGQHLFPQAPGAAPNVPQSNTSAPAGAEGQASAGEESRS
TETMSGTGLETPGAGSIPGFPFSFPPFPSAPWVGMPPPPFGMPPMPMPPSGFAGLTDEEL
RAMEGQERQNLEARLQCLQNIHTLLDAAMVQIHQYLSVVATLSPPRPTATTSSAPSTEST
DPTSGSQVDSTGDSPPPAFDSTSAQSPLQPEEIGQIDLEGAVGYSVPDSAEVPDDEKDAL
SEPDAAELRRRRLRKLDLPSGRH
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggtccgatcgacgttggccaccgcagccagcctggtgctcaccacaactgtggtcacc
catgcctattacctgaagcggcagttttaccctactgtggtgtatctgactaaatccagc
ccaagtatggcggtgctgtacattcaggcgtttgtcttggtcttcctcatcggcaagttc
atgcggaaggtgttctttgggcagctgcgtgctgcagagatggagcatttaatcgagcgt
tcctggtacgctgtgactgagacttgcttggcattcactgtcttcagggatgacttcagt
ccacgctttgtggccctcttcaccctgctgctctttctcaagtgcttccactggctagct
gaggacagggtggactttatggaacggagtccaaacatctcgtggctgtttcacttccga
gttgtctcactgatgggtttactggctctgttggatctgctgtttgtaaaccatgcctgt
cacagcatcatgacccggggagcatccgtccagctggtgtttggctttgagtatgccatt
ctcctcacaatggtgctgaccatattcatcaaatacattctgcacaccatcgatcttcag
agtgagaatccctgggacaacaaggctgtgtatatgctctacaccgagctcttgacaggg
ttcattaaggtgctgctctacatggccttcatgaccataatgatcaaggttcacacgttc
cctctgtttgccatccgtcccatgtacctgaccatgaggcaattcaagaaggcagtgact
gatgccatcatgtcgagaagagcaattcgcaacatgaacacgctgtaccccgatgccagc
ctagaggagctccagcaaaccgacaacgtctgcatcatttgccgtgaggagatggtaact
ggagccaaacgcctaccgtgtaaccacatcttccacaccagttgcctccgttcgtggttc
cagcggcagcagacgtgccccacgtgtcgcatggacgtgctgcgagtcacactccccacc
cagacgccgccgccgcagccgcctcagccgcaggtgccacagacccccctggtcccccag
caacccaatctgcctccagggatgccgccctttccgccaggaatgttccccttctggccg
cccatgggccagcacctcttcccgcaggctcctggtgcagctccgaatgtgccacaatca
aacacgtcagctcctgctggtgcagagggccaggcaagcgctggtgaagaatcccggagc
actgagaccatgtcggggactggattggagacgcccggtgctggatcaatcccaggattt
cccttctccttccctcccttcccgtcggctccttgggtgggaatgcccccccctccgttt
ggaatgcctccgatgccgatgccaccatctggctttgccggattgacagacgaggagctc
cgagcgatggagggtcaggagcgtcagaacctggaagcacggctccagtgtcttcaaaac
attcacacactgctggatgcagccatggtgcagatccatcaatacctctctgttgtcgct
actctcagtccgcccagaccaacggcaactaccagctcagcaccaagcacagagtcaacg
gatccaacgtctggatcacaggtggattccactggagactcccctcctcctgctttcgac
agcacctctgcacaatctcccttgcaacctgaagaaatagggcagattgacctggaaggg
gcagtgggatactctgtacctgactcggccgaagtcccggacgatgagaaggacgctctc
agtgaaccagatgcagccgaactgcgccgacggcggctgcggaaactcgacctacccagt
ggccgtcactga
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