Chiloscyllium plagiosum (whitespotted bambooshark): 122544187
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Entry
122544187 CDS
T08871
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122544187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122544187
Enzymes [BR:
cpla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122544187
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122544187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122544187
NCBI-ProteinID:
XP_043539176
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All DBs
Position
47:complement(7698000..7726743)
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AA seq
366 aa
AA seq
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MITDVSEWVVHAQEGDSLTLPSVPGLQIFEVQLVLRRALANIWTEVNDQNEIVVHRITYS
RRAQLENSLRDGCRVDLVLEAALGFTRVFRELIRSQKPLIGHNMLLDLMYLHDKFYRPLP
ESFVEFKTSTHKLFPSVFDTKHISKRTRQEFLSLRIPNLFALHAALESRLIDLAQHGPTL
NHAAVCQRYSQSDYPHEAAFDAFICGTVLLQLAQLLLTHQSSLFDPRTPRIGEYLDLLKP
YENNVNMIRARVSFTSLSGPDPQAERPPILLVKVRRGWSSTPAEIAKEFATFCSLDVRKE
SSRQYLLATNEWKGARKILRTYRSHPVFQVEPYRYWSHSGTVTSTFRLCCSLALATMLVF
FLGRPA
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgataactgatgtttcggaatgggttgtccacgcccaggagggagattcactcactctg
cccagcgttcccggtcttcagatattcgaggtgcagctggtgttgaggagagccctggcc
aatatctggactgaagtgaacgatcagaacgagattgtcgttcacaggatcacttactcc
agaagagcacagttggagaactcgctcagagatggttgtcgcgtggatctggtgctggag
gctgcacttggttttactcgagtcttccgtgagctgatcagatcccaaaagcctctgatt
ggacataacatgctcctggatctgatgtaccttcacgacaagttttatcgaccactacca
gagagttttgttgagtttaagaccagtacccacaagctgttcccctcggtgtttgacacc
aaacacatcagcaagaggaccagacaggagtttctgtctctccgaattcctaatctcttc
gctcttcacgctgctcttgaaagccggctcatcgacctggcccagcatggacccacattg
aaccacgctgcagtctgccagagatactctcaaagtgactatcctcatgaagccgcattt
gatgcttttatctgtgggacagtcttgctgcagttggcccagctgctgctgacccatcag
agcagcctctttgatccccgaaccccacggattggggagtatctggatctactcaagccg
tacgagaacaatgtcaatatgatcagagcacgtgtctccttcacgtccctctcggggcct
gacccacaggccgagcgacctcctatccttttggtgaaggtacgtcgaggctggagttcg
actcctgcggagatcgcgaaggagtttgccacattttgctcgctggacgtcaggaaagag
agttcaaggcaatacctgctcgccacaaatgaatggaagggggccaggaagatcttgcga
acctaccgatcccatcctgttttccaagtggaaccttatcgctattggtcccactcgggg
actgtgaccagcactttcaggctgtgttgctcgctggctcttgccacaatgctggtgttc
ttcctgggccgacctgcttag
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integrated database retrieval system
