Chiloscyllium plagiosum (whitespotted bambooshark): 122548219
Help
Entry
122548219 CDS
T08871
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03020
RNA polymerase
cpla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122548219 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
122548219 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122548219 (polr2a)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122548219 (polr2a)
Enzymes [BR:
cpla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122548219 (polr2a)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122548219 (polr2a)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122548219 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
122548219
NCBI-ProteinID:
XP_043542696
LinkDB
All DBs
Position
Unknown
AA seq
1717 aa
AA seq
DB search
MQGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYSETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLTKTMKVLRCVCFFCSKLLVDSN
NPKIKDILMKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGVEQQEGEEDLTKEKGHG
GCGRYQPRIRRVGLELYAEWKHVNEDSQEKKILLNPERVYEIFKRITDEECVILGMDPKY
AKPEWMILTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNNQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYRVERHMCDGDIVIFNRQPTLHKMSMMGHKVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFMDRGEVMNLLMHLSTWDGKVPQPSILKPRPLWTGKQIFTLVIPGHINC
IRTHSTHPDEEDNGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHITFLEMGH
DITRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVIQLRYGEDGLAGESVE
FQNLASVKPSHKNFEKKFKLEYTNERSLRRTLQEDIVKEILSNAAIQNDLEVEFEKMKED
REVLRAVFPTGDSKVVLPCNLLRMIWNAQKIFHINTRTVTDLHPIRVIEGVKELSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSGEAFEWLLGEIEAKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPDPQNTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEQEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
ASAHGEMDPMKGVSENIMLGQLAPAGTGSFDLLLDAEKCKYGMEIPTNIGGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPT
SPKGSTYSPTSPGYSPTSPTYSLTSPAISPEDSDEEN
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggacctccttccggagatagcgcatgcccactgcgcaccatcaaaagggtccag
tttggtatcctcagtccagatgagatgaaacgaatgtctgttactgaaggagggatcaag
tactctgagaccaccgagggaggccggcccaaactgggtggcctgatggaccctcgccaa
ggtgtcatcgagcgcacgggacgatgccagacctgtgcaggtaacatgactgaatgtcca
ggtcactttggacacatcgaactggcaaagcctgtctttcatgttggctttcttacaaag
acgatgaaagttctccgatgtgtctgtttcttctgttccaagttgctggtagattctaat
aatcccaaaatcaaagacatcctgatgaagtcgaaagggcagccccggaaacgtctgact
catgtctatgagctgtgtaaagggaagaacatctgtgaaggtggcgaggagatggacaac
aagtttggagtggagcagcaggagggtgaggaagatctcaccaaggagaagggtcatgga
ggctgtggtcgctaccagcctcgcatccggagggtgggtctggagctctacgcagagtgg
aaacacgtaaatgaagactctcaggagaagaagatcctgctgaaccccgagagggtgtat
gagatcttcaagcggataacagatgaggagtgtgtgatcctgggcatggatcctaagtac
gccaagccagagtggatgattctgacagtccttcctgtcccgccactctctgtgcgtcca
gctgttgtcatgcaaggctccgcccggaaccaggatgacctgacccacaaactggctgac
attgtgaaaattaacaaccaactgcgtaggaatgagcagaatggagctgcagctcatgtc
attgctgaggatgtcaaactcctgcagtttcacgtggccaccatggttgataatgagtta
cctggactgccgagggcaatgcaaaagtcaggccgcccactgaagtccctcaaacagagg
ctgaaggggaaggaagggcgtgtccgtgggaacctgatgggcaaacgtgtagatttctca
gcccgaactgtcatcacgcctgatcccaacctctccatcgatcaggtcggtgtgccacga
tccatcgctgccaacatgaccttcccagaaatcgtcacgccattcaacatcgacagactc
caggagttggtgaggagaggtaacaaccaatatccaggcgccaagtacattatccgagac
aacggtgatcgaatcgatttgcgatttcatcccaaacccagcgaccttcatctgcaaatt
ggctacagggtggaaaggcacatgtgcgacggtgatattgtcatcttcaaccgacagccc
accctgcacaaaatgtccatgatggggcacaaagtgcggatcctgccctggtcaactttt
cgtcttaatctcagtgtgaccactccgtacaatgctgattttgatggtgatgaaatgaat
cttcacttgccccagtccctggaaacccgagctgagatccaggagctggccatggtgccc
aggatgatcgtcacccctcagtccaacagacccgttatgggcattgtgcaggacacactg
acagctgtccgcaagttcaccaagcgggatgtcttcatggaccggggtgaagtcatgaat
cttttgatgcatctctcgacctgggatgggaaagttccccagccctccatcctgaaaccg
agaccactgtggactggtaagcagatcttcaccctggtcatcccaggccacatcaactgt
atccggacacacagcacccacccagatgaagaggacaatggcccttataaacacatctca
ccgggtgatacaaaggtgattgtggagaatggagagctgatcatgggtatcctgtgcaag
aaatcactgggcacatcagctggctccctggtacacatcacattcctggagatgggccat
gacatcacccggctgttctacagcaacatccagacagtcatcaacaactggctattgatt
gaaggccacactattggtattggagactccattgctgatgctaaaacctaccaggacatt
cagaacactatcaaaaaggccaaacaggatgtgattgaggtcatcgagaaagctcacaac
aacgagttggaacccactcctggtaacaccttgaggcaaaccttcgagaaccaggtcaac
cgaatcttgaacgatgcccgtgataagaccggttcctctgctcagaaatctctctctgaa
tacaataacttcaaatccatggtggtggctggctctaagggatcgaagattaacatttca
caggttattgctgtcgtcgggcagcagaacgtggaggggaagcgaattcccttcggtttc
aagcaccgtacactgccgcactttatcaaagatgactatggtcctgagagcagaggcttt
gtggagaactcttacctcgctgggctgacccccaccgagttcttcttccatgctatggga
ggcagagagggtctgatcgatactgctgtcaagactgctgaaactggttatatccagaga
aggttaatcaagtccatggaatcggtgatggtaaaatatgacgcaacggttcgcaactcc
atcaaccaagtgatccagctacgttatggagaggatgggctggcaggggagagtgtggag
ttccagaacttggcatcagtgaaaccatcccacaaaaacttcgagaagaagttcaaactg
gagtacactaatgagcgaagtctacgcaggaccttacaggaagacattgtgaaggagatc
ctcagcaatgctgccatccagaatgacctggaggtggagtttgagaagatgaaggaagac
cgagaggttctgagggctgtgttccccactggagacagcaaggtggtgctgccctgtaac
ctcttgcgtatgatctggaacgcgcaaaaaatcttccacattaacacccggacagtgact
gatctgcatccgatccgtgtgattgaaggggtgaaggagctgagtaagaagctgatcatt
gtgaacggcgatgacccactgagtcgtcaggctcaggagaatgccacgctgctgtttaac
atccacctgcgctccaccctgtgcagccggcggatgaccgaggagttccgactcagcgga
gaggccttcgagtggctgctgggggagatcgaagccaagttcaatcagtctatcgcacac
cctggtgagatggtgggtgctttggctgcccagtcgctgggagagcctgccactcagatg
accctgaacaccttccactatgccggagtgtcagccaagaatgtcacgctgggtgtccct
cgtctgaaggagctgatcaacatctcaaagaagcctaagaccccctcccttactgtcttc
ctgctgggccagtctgcccgggatgcagaacgtgccaaggatattctctgtcgattggag
cacaccaccctgaggaaggtcactgccaatactgccatctattatgaccctgacccccag
aacactgtggtgtcagaggaccaggaatgggtcaatgtctactatgaaatgccagacttt
gatgtgaccaggatctccccctggctcctccgtatcgagcttgaccgcaagcacatgact
gaccgaaagctgaccatggagcagatcgcagaaaaaatcaacgctggttttggtgatgat
ttaaactgcatctttaatgatgacaacgcagagaaactggttctccgaatccggatcatg
aacagtgacgagaataaatttcaagagcaagaggaggaggtggtcgataagatggatgac
gatgtattccttcgctgtattgagtcgaacatgctgactgacatgacactacaggggata
gagcagatcagcaaggtgtacatgcatctccctcagactgacaacaagaagaaaatcatc
atcactgaggatggggagtttaaggctctgcaggagtggattctggagacagatggagtc
agcctgatgagggtgctgagtgagaaggatgtggatccagtccgtacaacgtctaacgac
attgtggagatcttcacggtcctggggattgaagcagtgcggaaagccttggagcgggag
ctgtatcacgtcatctccttcgatggctcctacgttaactaccgccacttgtcactgctg
tgcgacaccatgacgtgtcggggccacttgatggccatcacccgtcacggggtgaaccgg
caggataccgggccgctgatgaagtgttcctttgaggaaactgtggatgttttaatggag
gcctcagctcacggggagatggacccaatgaagggggtgtctgagaacatcatgctgggt
cagcttgccccagcaggaactggctcatttgacctgctgctagatgctgagaaatgtaaa
tacggcatggagatcccaaccaacatcggaggcctgggagttggaggccctactgggatg
ttctttggttctgcccccagcccaatgggagggatgtcaccagctatgactccgtggaac
caaggggcaactcctgcttatggagcctggtccccgagtgtgggcagtggaatgacccca
ggagctgccggcttctctcccagcgcagcatccgatgccagcggcttcagtcccggatac
tctccggcatggtcccccacacctgggtctcctggatcccctgggccatccagtccctac
atcccatctccaggtggagcaatgtctccaagttactcaccaacctctcctgcctatgag
ccaaggtctcctggtggttatacccctcagagccccagctactcacccacctccccctca
tacagtcccacctccccctcctactctcccaccacaccaaaatactcccccaccagcccg
acctactctcctacctccccagtctatacccccacctcaccaaagtactcccccacctcg
cccacttactctcccacctccccgaaatattcaccaacctctcccacctactcacccacc
agccccaagggctcgacctactctcccacttccccgggctattcccccacttcaccaacg
tacagcctcacaagcccagccatcagcccagaggacagcgacgaggagaactga
DBGET
integrated database retrieval system
