Chiloscyllium plagiosum (whitespotted bambooshark): 122548415
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Entry
122548415 CDS
T08871
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpla03000
]
122548415 (prdm1a)
Transcription factors [BR:
cpla03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
122548415 (prdm1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2HE
B129_C2H2-zf
zf-C2H2_FBX41
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
122548415
NCBI-ProteinID:
XP_043542970
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Position
3:109102874..109196453
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AA seq
822 aa
AA seq
DB search
MKMDVEDVDMTQWTEAEFEENCTYIVNDQSWEPMVNSDLTHAQASLPRNLKFKYASHSNE
VLGVMSAEYIPKGTRFGPLVGEIYTNETVPKNANRKYFWRVYSNGDLHHFVDGFDESKSN
WMRYVNPAHSKQEQCLAACQNGMDIYFYTVKPIPANEELLVWYSSEFAERLHYPASGDLQ
MTKLKCIDLPRREELQGKWQHRSGDQPDASATEQRPKEKRYASDLADRVKSDNVMHKSQS
GEGNTMKEKNQVQAIQPLAAPGKEMQDINKKHSPERTFFPRVVYPVRPHIADDYLKPSPV
FGIERHGYVKHSPIQPSLTSSPSSRSSPDQSLKSSTPHSSPDSHISSLTPSTQEHKQAFP
YLSGPYNREGLSSFTAYPPPGHLPPAFLHSYNPVNTQYSRFLLPHYPVGCNGLNSFPGLS
GINGVNSFSLLPKMYPLYSSLLGNGGLPQHLFNQTVLPSALHPEGARRLLLPEQQKDFLI
PARKSAFSIAGSAASLKDRPTSPCNGSPTAGTAASYSEHLMQPKPTSAGLVSSTSSSSEE
AMNLIKPKRSLTGYKTLPYPLKKQNGKIKYECNVCYKTFGQLSNLKVHLRVHSGERPFKC
QTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKLCP
AKFTQFVHLKLHKRLHTRERPHKCLQCHKTYIHHCSLKAHLKGNCPIAPGAGRSLEDLNR
LNEEINKFDISDNADKLDDLGHSDDMESAIEKQIFSMLRREMEEASLKNPFQRNLGNNLL
SSGCNLYENLETPVLKMSRGSPLPLVPVKVKQETVEHIDPCN
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggatgtggaagatgtggacatgacccagtggacagaggctgaatttgaagag
aactgtacctacattgtaaatgaccagtcctgggagcccatggtgaacagtgatctaaca
catgctcaagcatccctgccccgaaacctaaaattcaagtatgcatctcactcaaatgag
gtgctgggagtaatgagtgcagagtacattcccaaagggacacgctttggaccactggtg
ggtgagatctacaccaatgagaccgtccccaaaaatgcaaaccgaaaatacttttggagg
gtgtactccaatggtgatttacatcactttgtcgatgggtttgatgagagcaaaagtaac
tggatgcgatacgtgaatccagcccattcaaagcaggagcagtgcctggcagcttgtcaa
aatggaatggacatctacttttacacagtgaagcccatcccagccaatgaagagttactg
gtctggtacagcagtgagtttgcagaacgcctccactacccagcctctggggatcttcag
atgactaagctaaagtgcattgacctgcctcgaagggaggaacttcagggaaaatggcag
cacagatcaggagaccagcctgatgcttctgctacagaacaaagaccaaaggaaaaaagg
tatgcaagcgacctggccgacagagtgaagagtgacaatgtgatgcacaaaagtcaaagt
ggtgagggaaacacgatgaaggaaaagaaccaagtacaagcaatccaaccgctggcggct
ccgggaaaagaaatgcaggacatcaacaaaaagcacagcccagaacgtaccttcttccct
cgtgttgtgtacccagtcagacctcacattgcagatgactacttgaaacctagtcctgtt
tttgggatcgagaggcatggttatgtcaaacactctccgatccagccttcacttacctcc
agtccgtcgtctagaagcagcccagaccaaagtttgaaaagctcaactccccacagcagt
ccggactcccatatttcctctctgacaccttcgactcaggaacacaaacaggcctttcct
tacttgagtggaccttacaaccgagaaggattgagctccttcacagcctaccctcctcct
ggccatctgcctccagccttcttgcattcctataatccagtaaacactcagtattccagg
ttcttgttacctcattacccagttggttgcaatggtttgaacagcttcccgggcctcagt
ggcatcaatggtgtgaacagcttcagccttcttcccaaaatgtaccctttgtacagcagt
cttttaggaaatgggggcttgccccagcacctattcaaccagacagtccttcccagtgcg
ttacatcccgaaggagcccgaagacttctgcttcctgagcagcagaaagactttctcata
ccagcgaggaaaagtgccttttcaatcgctggctctgctgccagtttgaaagacaggcct
acaagcccctgcaacggttctccgacagctggcacggctgcctcctattctgaacattta
atgcaacccaaacctacctcagctggcctggtcagcagcaccagtagcagcagtgaagaa
gccatgaatctcatcaaaccaaagcgaagtcttactggttacaaaacacttccatatcct
ctaaagaagcaaaatgggaagatcaagtatgagtgcaatgtctgctataagacctttgga
cagctatcaaatctcaaggtccacttgagagtacatagtggggaaagaccatttaagtgt
cagacctgcaataaaggtttcacacagctagcacacctacagaagcactatttagttcat
actggagaaaagccacatgaatgtcaggtttgccataaacgtttcagtagcaccagcaac
ctgaagacccacctacggttacactcgggtgagaaaccttaccagtgcaaactgtgcccg
gcaaaattcacacagtttgttcatctcaagctgcacaaacgcctgcacacaagggagcgt
cctcacaaatgcctgcagtgccacaagacctatattcaccattgcagtctgaaggcgcac
ctcaaaggaaactgccctattgccccgggtgctgggcgatccctggaggacctgaaccgc
ctaaacgaggagatcaacaagtttgacatcagtgacaatgcggacaagctcgatgacttg
gggcacagcgatgacatggaatcagcgatcgagaagcagatcttcagcatgctcaggaga
gagatggaagaagccagtctaaagaacccttttcagaggaacctgggcaacaacctcctc
tcctctggctgcaacctgtacgagaacttggagactccagtcctgaaaatgtctcgtggt
agccctctacctctcgtgcccgtaaaagtcaagcaagaaacagttgaacacatcgatcca
tgtaactag
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