Chiloscyllium plagiosum (whitespotted bambooshark): 122548424
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Entry
122548424 CDS
T08871
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122548424 (taf1c)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
122548424 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
122548424
NCBI-ProteinID:
XP_043542998
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All DBs
Position
1:complement(56989775..57041921)
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AA seq
1049 aa
AA seq
DB search
MAYSSSQRRSRAAGIPGGWRKGSGPHSCQTEVIWKAVLTPGSARARRHRPGVRGLVSVGM
PCGVSDGPMESAFPYSLYPSFYNPGPSVRNPREPGGWGQYEHVQPFCAESGDQQETELKW
SALKSLKQESWEPLEPIALPLLPAKTVCKFQPTSLEDLTYTGRLMTTGGRDEMTMGALNF
TLQMANFFLDHRNDAFSSMGKLLEENFYFGEYPLRGKARQTTINVSHLRAFTEQVKQNEC
PLSCRSMQARLLNTLLRECIFDIPPSLLAENIHEEMKIQRNKLLFDQSATGGALVYCPFS
KEASLEEGCLIYPGSESMSILNFHKIKLGLDEHKMPKLNVKFKPMKFKLNGRIHQIDSSA
VEEEVFIGVRSDYHCGVWKLSQDVNPSILQVVQVDNIATCINVSPHVPGELVIASECGTA
YLWTLDKGLQKIRKEADNLYFNAQLPWRWCDFTAHPRVYMYADRTGLDLTDVRAGKTCDQ
TLFKIGATANCQKGERVILPKHLQDVNPYHYLVTTQYSAYIVDERFPTVPVLKWAHMLKS
PPMFAQVACGAAKKRANKIVLGTQRTQEVLLLQYSGGSQLPCKSLGPPLKLSSIYDMMQH
LPVKLPRQHEAVVERLHSPGAGLATLYHCCGKKSLSVIQLSAVGDLFYQMLIHKNSSTSR
KTSRVRVGCDHEPNNSILTERVQSSNHSTESRDEGAEDLAQGETERPEGNSSRSEVDEQS
FQCTNKPLKPSCTALATCSRWVNSFLKKQKSFQSASNMLYKRTGISSKRLFPCKTFKKGE
ESTDTCRELWNKMSAVMEKQQVLCHSTFPILDPVSVPDVVDASNWRDELSERLTAAWEGK
WSQWWEEKLGMNRDKKVQALRAKRRREKLARIRQRKELSGSFTSSVSGLSDFSDFSSWST
FSGINSEHSDYLSGTESNVTSNKSAEANQSIRTVAKESRREMEAESSAAVVEQSQAPIPI
FSQEMQLVSIPKERKRILQNYLAALEDHSFQPSQEGDEPSMPLSLTSSIQMSFPEPSQVA
SSYEVPWRPSSQSQVGSSQPKKKRAKMGF
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcgagcagccaaagaaggtcgcgagctgccgggatccctggcggttggcgc
aaaggctccgggcctcattcgtgtcagacggaagtcatttggaaggcggtcctcactcca
gggagcgcgcgtgcgcgcaggcatcggccgggggtgagggggctggtttccgtagggatg
ccatgtggggtcagtgatggtccaatggagagcgctttcccctactccctgtatcccagc
ttctacaatcccggcccatccgtcaggaaccctcgggagccgggtggctgggggcagtat
gaacatgtccagccgttctgtgcggagagcggggaccaacaggaaactgaattaaaatgg
tcagctctgaaaagtctgaagcaagagagttgggagccattggaacccattgcacttcca
cttcttccagccaaaacagtttgcaagtttcagccaacaagcctggaagatctaacttat
actgggaggctaatgacaactggaggaagggatgaaatgacaatgggtgcacttaatttc
acgctacagatggctaatttctttcttgatcaccgtaatgatgccttcagttcaatgggc
aaacttctagaggagaacttctattttggagaatatcccctcaggggaaaagcaagacag
accacaataaatgtaagccatctgagggcgttcacagagcaagtaaagcaaaacgagtgc
ccactttcttgtagaagtatgcaagcaagacttttaaatactttgttgcgggagtgtatt
tttgatattccaccaagcttgttggcagaaaacattcatgaagaaatgaagattcaaaga
aacaaacttctgtttgatcagtctgccactggtggtgctctggtatactgtcctttctcc
aaagaagccagtttagaagaaggatgcctgatctatcctggcagcgagtccatgagtata
ctgaactttcacaaaatcaagttgggtcttgatgaacataaaatgcccaaattgaatgtg
aaatttaaaccaatgaaatttaaactaaatggtagaatccatcaaatagattccagtgct
gttgaagaagaagtttttataggggttcggtctgactatcattgcggagtgtggaagctt
tcccaggatgtgaatccatctattctacaggtagttcaggtggataatattgctacttgc
atcaatgtcagtcctcatgttcctggagagctggtgattgccagtgagtgtggaactgcg
tacctctggactttagacaaaggccttcagaaaattcgaaaggaagcggataatctctac
tttaatgcccagttgccttggagatggtgcgatttcacagctcacccacgagtttatatg
tatgctgacagaaccggccttgacttaactgatgtgagggctggcaagacctgtgaccaa
accttgtttaagataggagcgactgccaactgtcaaaaaggtgaacgtgtaattcttccc
aaacatctgcaagatgtaaatccatatcattatcttgttaccactcagtattctgcctac
attgtagatgaacggtttccaactgtacctgtcctaaaatgggctcacatgctgaagtca
ccaccgatgtttgcacaagttgcatgtggggcagccaaaaaaagagcaaacaagattgtc
ctggggactcagcgtacccaggaagtcttacttctgcagtattcaggtggatctcagctt
ccttgcaagtcacttggcccaccactgaagctttctagtatttacgatatgatgcagcat
ttaccggtcaagttacctcggcaacatgaagcagttgttgagagacttcactcccctgga
gcaggactcgcaacactttaccattgttgtggcaaaaagtccctgtcagtgattcagctc
tctgcagtgggagacctgttttaccagatgctaattcataagaattcatcaacaagtaga
aaaacctctagagtgagggttggatgtgatcatgaaccaaataactcaattttgactgaa
agggtacaatcatcaaatcattctacagaaagtagggatgaaggagcagaagatttggca
caaggtgaaactgaaagaccagaaggaaattcttcacgaagtgaagtagatgaacaaagt
ttccaatgtactaataaacctttaaaacccagttgcactgctcttgccacatgttcaaga
tgggtaaactcatttttaaagaagcaaaaaagctttcaaagtgcctccaatatgctctac
aaacgtactggtatcagttcaaaacgtttgtttccatgtaaaacatttaagaagggtgaa
gaatcaactgacacatgcagggaactgtggaataaaatgagtgcagttatggagaagcaa
caagtcctttgtcacagtacgtttccaatactggatcctgttagtgtcccagatgttgtg
gatgcctcaaattggagagatgaactaagtgaaaggctgacagctgcgtgggaaggaaag
tggagtcagtggtgggaagaaaagctaggtatgaaccgggataagaaggttcaagcacta
cgtgcgaaaagacgacgtgaaaaattagcccggataaggcaacggaaagagctctcgggc
agtttcacttcctcagtatctggcttgtctgacttcagtgatttttcaagttggagtact
ttctctggaataaattcagaacacagtgattatttgtctggtacagaaagtaatgttaca
tccaataaatcagctgaggcaaatcaatcaattaggacagttgctaaagagtctcgtaga
gaaatggaggctgagtccagtgcggctgtagtggaacaaagccaggcacccataccaatt
ttttcacaggaaatgcagttagtcagtattcccaaggaacggaaaaggattcttcaaaat
tacttagccgccctggaagaccattcattccaaccttctcaagagggtgatgaaccaagt
atgccattatcattaacttcatccattcagatgtcttttcctgaaccatcacaagttgca
tcttcttatgaagtaccctggcgaccatcctctcagagtcaagttggatcatctcagcca
aagaagaaaagagccaagatgggattttaa
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