Chiloscyllium plagiosum (whitespotted bambooshark): 122548819
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Entry
122548819 CDS
T08871
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122548819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122548819
03036 Chromosome and associated proteins [BR:
cpla03036
]
122548819
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122548819
Coactivators
SAGA/TFTC/STAGA complex
122548819
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
122548819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
122548819
NCBI-ProteinID:
XP_043543559
LinkDB
All DBs
Position
4:4462255..4588005
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AA seq
796 aa
AA seq
DB search
MPTPSVPRREAESGGGGLPVPASSTPSNSSNNDSDSSRAGSCPPPPPQNGPGPGPEPGPA
GTPASSSPAASLPQPQPPVPAPSPAPTPLRVMPLPERQNQAGPFSGGGGGGGGEMPPSPA
LMKTAAVTTSTSAAAAATGSPLPASRAPTVTVQRISVSSPHIKTSSPLNQVTVPLLQNLQ
VPAGMVLVRSDSGQLVLVPQKVIAQAQAKARAQGAGNLSSAVSTGTPSVRISTIQATGTQ
RIPNQVKTSTQQMNQFQAGGQTNAAPQRITVVQQQAAGGAIMPKTVSTIVQKQTSAPADR
SVTVPVVQTTASPETLENVKKCKNFLATLIKLASSGSQSPQMSSNVKALVQKLLDGKMEV
EEFTEQLYKELKSSPQPYLVPFLKRSLPDLRKLMPNSQAFIQQCLQKPATPAAPIAASSG
GSKQVSPGQASKSITVMSASQPTKVLQTLPSPQMVVQQSGVVIKSQASPLPKTQTVTLQK
PPNHIIVPVSQNQAKETKAGAATLVTKVTLSQVNKNPTNVLIRASPGQILKKEAGGTTFR
EEDDINDVASMAGVNVNEERARILATNSELVGTIIRSCKDEAFLSSASLQRKALEIGKTH
GVTEVNSDVLSTISHATQEHLRELVEKLTVIAQHRMMTYKDNDRYSLLNDTRSQLKFFEQ
LDRLEKQRKDEDEREALLRLAKSRTKHEDPEQLRLKQKAKEMQQLELAQLQQREANLAAL
AAIGPRKRKMPDSPGLRTGNEGLGGNGNAPGGLRATPARPYLRQRVTRVNLRDLILCLEQ
DQARKHSLLLYRAYLK
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcccactccgagtgtcccgcggcgagaggcggagagcggcggcggcggccttcccgtc
ccggcctcctccaccccctccaacagcagcaacaacgacagcgacagttcccgggccggc
tcatgcccaccgccgccgcctcagaacgggcctgggcctggacccgagcccgggccagcg
gggacaccggccagctcttcacccgccgcctcccttccccagcctcagccgccggtcccg
gctccctctcctgcaccgacccctctccgagtcatgccgctacccgaacgtcaaaatcag
gccgggcccttttcaggaggaggaggaggcggcggcggcgagatgcctccctccccggcg
ttgatgaagaccgcggcggtaaccaccagcacgtcggcggcggcggcagcaaccgggagc
ccactcccagcctccagggctcctactgtcaccgtccaaaggatcagtgtctcttccccg
cacatcaaaacctcttccccgctcaaccaggtcacagtccccctcctgcagaacctccag
gtgccagcaggcatggtgcttgttcgaagtgacagtggacagttagtgttagttccacag
aaagtcattgctcaagcccaggctaaagcccgagcacaaggagctggaaacctctcatct
gcagtgtctactggcacaccctcagtccgaatttctaccatacaggcaactgggacccag
aggattcccaatcaagtgaaaacctctacccagcaaatgaaccaattccaagctggaggc
cagacaaatgctgcaccacaacgcatcacagtcgtgcagcaacaggctgcaggtggagcg
attatgccaaagactgtatcaacgatcgtccaaaagcaaacatcggcacctgcagaccgt
tccgtcactgtgcctgttgtgcagacaactgcttctccggaaactttggaaaatgtgaag
aaatgcaagaacttccttgcaacattaattaagctggcttccagtggttctcagtcgcca
caaatgtctagtaacgtgaaggctttggtgcagaaactgttggacggaaagatggaagta
gaggaattcacagaacaattatataaagagcttaagtcctcaccacagccttatcttgtg
ccttttctcaagcgaagtttaccagacttgcggaagttgatgccgaattctcaggctttc
attcaacagtgcctacagaaacctgcaactccagctgctcccattgcggcttcgtctgga
gggtcaaaacaagtcagcccagggcaggcatcaaagagtatcacagtaatgagtgcttca
cagccaacaaaagtcttacagactctgccatcgccgcagatggttgtccaacagtctgga
gtagtaataaagtcacaagcaagccccctgccaaagacccagacagtgactttgcaaaaa
cccccaaaccatatcattgtccccgtatctcaaaatcaggccaaagaaactaaagcaggt
gctgcaacattggtcacaaaagtaacactctctcaagttaacaaaaatccaacaaatgtt
ctaatacgagcctcgcctggtcaaatactaaaaaaagaagctggaggcacaacgttcagg
gaggaggatgacatcaatgatgtggcctccatggctggggttaacgtcaatgaagagcgt
gcacgcattcttgcaacaaactctgaattggtgggcactattatccggtcctgtaaagat
gaagcatttctctcctctgcatccctgcagagaaaagctttggaaatagggaagacgcac
ggtgtgacagaggtgaattctgatgttttgagcaccatatctcatgccacgcaagaacac
ttacgggaactcgtggaaaagctcacagtaattgcacagcatcggatgatgacatataag
gacaatgaccgatacagcctattgaatgatactcggtcgcaactgaagttttttgagcag
ttggatcgactggagaagcagcggaaagatgaagatgaaagagaagcactgctaagatta
gcgaagagtcgaaccaagcatgaagacccagaacaacttaggttaaagcaaaaagccaaa
gagatgcaacaattagaacttgcgcagctgcagcaacgggaagcaaatcttgcagcactg
gctgccattggaccaaggaaaagaaaaatgcctgattcaccaggtctccgaacaggaaat
gagggcttgggcggcaatgggaatgcgcctggtggtcttcgagcgacaccagcccgaccc
tacctgcggcagagggtaacacgagtcaatctcagggatctcatcctgtgcttggagcag
gaccaagcaaggaaacactcactgcttctgtaccgagcctatctcaagtga
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