Chiloscyllium plagiosum (whitespotted bambooshark): 122548903
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Entry
122548903 CDS
T08871
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
cpla04518
Integrin signaling
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122548903
04518 Integrin signaling
122548903
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122548903
09142 Cell motility
04820 Cytoskeleton in muscle cells
122548903
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cpla00535
]
122548903
Proteoglycans [BR:
cpla00535
]
Extracellular matrix (ECM) proteoglycans
Others
122548903
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
122548903
NCBI-ProteinID:
XP_043543793
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Position
4
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AA seq
970 aa
AA seq
DB search
MGLGVFHGSRNKEEGFLVMLYIFTLAILPTFFWSPVLCSVEDRLNYNGLDDNTVCPNIRI
GQDDLPGFDLITQFQLDTIPLRGVKRVEGSTPLQIAFRLDREANFEIPTRIIYPRGLPEE
YSFVTTFRMVKNTVHKVWNLWQIVDENGYKQVGLRLNGNTQSLEFYLVGLDSNLQSVIFR
GVSQIFDTDWHKILVGVERDTVSLFVDCHRVASQPIKPKGNVNVEGNTLIGRLDANHKVS
VVFELQWMLIHCDPQRAHREACTELSIQQRIIPNSEPDFVFRGPRPDFGKANLPGLPGPP
GLPGPPGVPGSSGSPGVAGPPGRDGKTGLDGVAGPPGKPGLPGQKGERGDVGFTGQPGKP
GLPGINGRPGPIGPMGPEGRVGPPGMPGPEGPPGPAKIGIPGPPGEIGLTGEPGLPGKPG
DPGPKGASGTPGLPGLQGPPGTPGTDGSGDVVCTMSCPAGPPGPPGLLGFKGHKGQKGAS
GEAGKEGPKGNRGFPGQQGIGGAPGPEGSRGPRGFPGASGEKGSKGVPGFNGLPGPPGPQ
GPTGPEGPRGPNGEPGIKGAKGPEGPRGLYGTPGAKGERGTAGHPGRDGNPGPEGQKGDA
GIPGRMGETGPSGLPGLHGSPGQKGHIGQKGDLGMMGEMGPPGIPGEPGDPGTPGQRGPQ
GHQGLPGSSGEQGPIGPPGLPGPPGSKGDFGRPGLQGPLGFPGGRGDKGSAGVPGLKGNV
GKPGLNGEHGEKGEQGIPGLQGKKGEPGAPGETGPVGAQGPRGRPGFQGPSGAVGARGLE
GERGAPGLPGSPGKDGKEASVHRIREVCMNMIQEQISELAASLRQPITSGKPGRPGPPGP
PGPVGPPGSAGHPGAIGPQGVKGHQGYPGEPGTKGVPGEKGEKGEEGIGLRGPPGPQGMP
GVDGLPGIGKDGRDGARGDHGLPGEPGPPGIPGLRGFPGICDASACVSPPHLFMGMGSGK
KSINVKGPSK
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgggcttgggagtgttccatggatcaagaaataaagaggagggattcttggtgatgctg
tatattttcaccttggcaattttaccaacattcttttggtctccagtattgtgttcagtg
gaagacagactcaactacaatggtctggatgacaacactgtgtgtcctaatattaggatt
ggacaagatgatttgccaggatttgacctcattactcaattccaattggataccattccc
ctacggggtgtcaaaagagtggaaggttcaacaccacttcagattgccttcagacttgac
agagaggccaattttgaaattccaacaagaataatctacccacgagggctgcccgaagag
tattcctttgttaccaccttccggatggtaaaaaacacggttcataaagtgtggaacttg
tggcagattgtggatgaaaatggctacaagcaagtaggcctgaggctgaatggcaacacc
cagtccttggagttctatttagtcggcttggacagcaatctgcagtcagtcattttccga
ggagtttcccagatctttgatactgactggcataagatcctggtgggtgtggagagggac
actgtcagcctattcgtggactgtcatcgtgtagcctctcagcctattaagccaaaaggt
aacgtcaatgtagaagggaatactctgataggccgtctggatgcaaaccacaaagtgtcc
gtggtgtttgagctgcagtggatgctgattcactgtgatccacaacgtgcgcatcgagag
gcctgcacagagttatctatacagcagagaattatccctaattccgagcctgattttgta
ttcaggggtccaagacctgactttggaaaggcaaatctgccaggattaccaggtccacca
ggattaccgggtccaccaggagtaccaggatcttcaggatctccaggggttgcaggccca
cctgggcgggatggaaaaactggacttgatggtgtagcaggtcctcctggtaaaccaggc
cttcctggtcagaaaggagagcggggtgatgtcggattcacaggacaaccaggaaagcca
ggccttcctggaataaatggaagaccaggaccaattggaccaatgggtcctgaaggtcgc
gtgggccctcccggcatgcctggtccagaaggtccaccaggacctgcaaaaattggaatt
ccgggaccacctggtgagattggactgactggagagcctggccttccaggaaagcctggt
gaccctggaccaaaaggagcatcaggcacacctggacttccaggtctacagggcccacct
ggtacaccagggacagatggaagtggagatgttgtgtgtacaatgtcttgtcctgcaggc
cctcctgggccacctgggctgctaggatttaagggccacaaaggtcaaaaaggtgcatct
ggagaggctgggaaagagggtccaaagggaaatcgtggttttcctgggcaacaaggtatt
ggaggtgctcctggacctgagggttcccgaggaccaagaggctttccgggtgcatctggt
gaaaaaggaagcaaaggagttccaggatttaatggcctgccagggcctccaggaccacaa
gggcctactgggccagagggaccaagaggtccaaatggagaaccaggcatcaaaggtgca
aaaggtccagaggggcctcgaggactatatggtactcctggagctaaaggtgaacgtggt
acagctgggcatcctggacgggatgggaatcctggaccagaaggtcaaaagggagatgct
ggaataccaggtcgaatgggagaaactgggccttctggtctacctggattacatggctct
ccaggacagaaaggacacattggacaaaagggtgatttaggtatgatgggagaaatggga
cctcctggaatcccaggagaacctggtgatccaggaaccccaggacaaaggggaccacaa
ggacaccaaggccttcctggcagcagtggagaacaaggacccattggaccccctggtttg
ccaggccctcctgggtcaaagggtgactttggtcgccctggactccagggtcctcttggt
tttcctggaggaagaggagacaagggttcggctggtgttcctggtctcaaaggaaatgtg
ggaaaaccaggtctgaatggcgaacatggagagaaaggggagcagggcattcctggtctt
caaggcaagaaaggagagcctggagcgcctggtgaaactggtcctgttggggctcaaggg
cctcgtggtcgtcctggatttcagggaccttcaggtgcagttggtgcccgaggactggaa
ggagaacgaggggctcctgggcttcctgggtctccaggtaaagatggcaaagaggcaagt
gtccatcgaatcagggaggtgtgcatgaacatgattcaagagcaaatatcagaactggct
gccagcctaagacaacccataacgtctgggaaaccaggtcgacctggaccgccaggaccg
ccaggaccagttggccctccaggatctgcaggacacccaggtgcaatcggcccacaaggt
gtcaaaggtcaccaaggttaccctggtgaaccaggaaccaaaggtgtaccaggtgaaaag
ggtgagaagggagaagaaggaataggattacgtggaccaccgggacctcaaggaatgcct
ggtgttgatggcttgcctggaattggaaaggatgggcgggatggtgcccgtggtgatcat
ggcctgcctggtgaaccaggaccgcctggcatacctgggctcagaggctttcctggtatc
tgtgatgcttctgcctgcgttagtccacctcacctcttcatgggaatgggcagtggcaag
aaatccataaatgtgaaaggtccatcaaaataa
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