Chiloscyllium plagiosum (whitespotted bambooshark): 122549137
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Entry
122549137 CDS
T08871
Symbol
rttn
Name
(RefSeq) rotatin isoform X1
KO
K16484
rotatin
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cpla03037
]
122549137 (rttn)
Cilium and associated proteins [BR:
cpla03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
122549137 (rttn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF383
Motif
Other DBs
NCBI-GeneID:
122549137
NCBI-ProteinID:
XP_043544400
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All DBs
Position
4:79517387..79689746
Genome browser
AA seq
1833 aa
AA seq
DB search
MMMCALELLFQMIFLLDEPTCQDLWNNARLVGQGLMDSLMASLEALGETLNYHHMSITTV
ESETAIVYHRLAFISIALLTIRLLQIILPVEKARKFLPQNLGNVLYFLSVDLSFRFSYPS
VHESVTVFLEQISQEHYTIYKNATEIIQSMENVCTFLRDRKDEHNLMELIEFANHALVCL
PYHQQLKMILRCVEICSKISKSVDASPLIEAESRKILLKLLSHAMPIIKAECYRCCLKLV
KVCLRIHNVIKPVLSSSNGINFLLHAWVLYEIGTFGLQDPNQQVNSAAKEILIYLLQSRL
IMSTFSWNKLIEALYPVIPILQGFASTEDPLGKCILALSEPCNEDTAGILSRTARIRASL
RLFMSKLHLVRSVALTHLMPHLVNEEDASNKLPVLQGSILNYVSDLYILEKSIDLQLDTG
KSIVKESNACKVCEILISETVDLSLRKSAAEQLAVMAQDAKLHAVLKRQGIVEKIVSFAH
ESVHRNGKCMQCLVLPCLAVLRKLVYLDPALRHTLALQTSFLLTLFRVSLVLQKDKEILG
EVAALLTLLLFDEVARIDYWPENITAPTAPFSLPAIVTQRYNLMVKVPIHHAVSPYCTVV
PSSSNPMNMKPVSDMLKVGWNLAWYGGTDQVLDQNGHTGIDTSPEFLENLKLSCVDIAML
KTTYVTRGLQECLVSITEAVSHRAVSSALARMRLYLLNDKLALKQGTDSTISILHDLEWQ
TALSRFLLVLPACVEDEKLLADVLAFLSKMLKAQRDSTDTQDLNLLLELLLKQETNPLMN
LLLQTGSPVQGEMDEIQALVKQKLQKELTGFFNSILQSLTSVTSRKCLLLAGPFRTQLSV
KLLQCLRITNAPHFYGLPALERTLRGMVYVTAVPGWTLHSTTEDPYTLCKKYLMGLLEVI
SSFYVEWGGNAMSFMGKGVTKSAVICLLQLSYEMRTQAKEKDWISLWSLADEQNNEDQMP
SRLGLAWLIPLWVDRDPEVRFGSLGIGSALTLVENGCIAFAASCQNISGGLWGTVLNILL
DQSECSMARKEAASILQNLLMIQMPATLEEAKNSVWQSPCVHDEESGLSLVGLPALQALL
YHCQFYERVAHMAKQCYLGRYMFDLNSPKPTGRNFLNSNLEADIDSLEYWRTSSGLSNHS
HLSSFPSTSSTLILPSPPLSDSTPDFQRQLHDSAVSPILIPDSPSNRLTAQGQSDSETTQ
SPHSGNSHVSDPPFEQCAVITLHFSSALCGLLANLLATIPEDTLNGVKQNQLLAAFHGLV
NTDLLDRCLWELGAPLTCLNQYEDIKAQILSHLQYLSAFSNLVQHCLVLHPEHTIQDDLL
KPLLLNIFTVLCIQCKDYFGCEVTSAIYQAWTDLFMLLNTILRKSAQDTFPAVVTAVAKH
WAALIDTISLCIEMSTTRSCLYTVSLQFISLLLTEEGKRQCQIGAINHSINSLTITKLLD
GNEGDESSGSQLCESLLKSFEGKSSDDPLRKVAAGALTALLPVSICAQKHALEAGLIDSC
IEQIKHTYVQFNLDSLRPGKVIQRKKDDNLSRELKMVMQLLRNCLYHNVECKVAASDAHL
GSAIYPLWPWFLMDDMLMLATLKLLCVYTANLPASCVSLCCGSGTPLVSHSSQRGMAGNS
LVHMIMKLVLQKTWDNSAIQQMAFAVLSNLAVSHECKGVMQKSNFLQNFLALPLPKTAGK
PLSTRAMLWLKLLLNISFEDEGQQIILKMNGSLELLTAMSQHKHKNNQTTALLVLHNICF
NPANKPKVLANDKTMSVLAACLESENHTVQAIGASALWALLHNYQKAKVTLKNPSIKRRV
DEANFSIKKCNLEGSLNIYLMKCLKNLAVLLNS
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgtgtgctttggaactgttgtttcaaatgatatttctccttgacgaaccaacc
tgtcaagatctctggaataatgctcgtctagtgggacaagggctaatggacagcctgatg
gcaagtttggaagctctaggggaaactcttaactatcaccatatgagcattactacagtg
gagtcagagactgctatagtgtaccaccgattagcatttatcagcattgcattattaact
atacgcctgctacaaataattctcccggtggagaaggcaagaaaattcctgcctcagaac
ctaggaaatgttctgtactttctgtccgtggatctatcattccgtttcagctatcccagc
gttcatgagtctgtcactgtcttcttggagcagatcagccaggagcattatacgatatat
aagaatgcaaccgagataatacaatcaatggagaatgtgtgtacttttctcagagaccgc
aaggatgaacataatctaatggagctgattgaatttgcaaaccacgctttggtttgcctt
ccgtatcatcagcagctgaaaatgatccttagatgtgttgaaatctgctcaaaaatttcc
aaatctgtagatgccagtccactaattgaagctgagagtcggaaaatactcctgaaactt
ttgtctcacgccatgccaattattaaagccgaatgttatcgctgctgtttaaaactcgtg
aaggtttgccttcgaatccacaatgttatcaagccagtgttatcaagttctaatggtatt
aatttccttctccatgcctgggttttgtatgaaataggtacattcggcctacaggatcca
aatcaacaggtgaacagtgcagcaaaagaaatacttatttacttactgcagagccgcctg
ataatgagcactttcagctggaataagttaattgaagcgttatatcctgtgattccaata
ttgcaggggtttgcatcaactgaagatccactaggaaaatgcatccttgcactgagtgaa
ccatgcaatgaagacacagctggcattctgtcacgcacagccaggattcgtgcatctctt
cgactttttatgagcaagctgcatttagtccgctctgtagctcttacacacttgatgcca
cacctggtaaatgaagaagatgcctccaataaactgcctgtgctgcaaggaagtatattg
aattatgtgtctgatttgtacatattggagaaatctattgatttgcaattagacactggc
aaatctattgtcaaggaaagcaatgcttgtaaagtatgtgaaatcctgatctctgagact
gttgacctgtctcttcgtaaatctgcagcagagcaactggctgttatggcacaagatgcc
aaactccatgcagtcttgaaaagacagggcatcgtagaaaagattgtttcatttgcacat
gaaagtgtgcacagaaatggaaagtgcatgcagtgcctggtgttgccatgtcttgcagta
ttacgaaagctggtttacttggatccagctctgcgccacaccctagctctgcagacctct
ttcctgctgaccctcttcagagtgtccctggttttgcagaaagacaaagaaattcttggt
gaggtggcagctttgctaactctactgctgtttgatgaagtagccaggatagattattgg
cccgagaacatcactgctccaactgcaccattcagtttaccagctattgtaacccaaagg
tacaacttaatggtgaaagtgccaattcatcacgctgttagcccttactgcaccgtggtt
ccatcttcttcaaatcctatgaacatgaaacctgtgtctgacatgttgaaagtgggttgg
aatcttgcttggtatggtgggactgatcaggtcctggatcagaatggacatacaggaatt
gatacatctccagaatttttagaaaacctgaagttatcttgtgtcgacattgcaatgctt
aaaacaacctatgttactaggggtttgcaggaatgtcttgtttccatcacagaggcagta
tctcatcgtgctgtcagttctgctcttgctagaatgagattgtatttgttgaatgacaaa
ctagctctgaaacaaggcactgactccactatatctatattacatgaccttgaatggcaa
acagcactgagcaggtttttactagtccttccagcctgtgttgaagatgagaagctcttg
gctgatgttttggctttcctgagcaaaatgttgaaagcacaaagggatagtacagatact
caggatctaaatctgcttctggagctcctccttaaacaggaaaccaatccactgatgaat
ttgttgctgcaaactggatcaccagtgcaaggtgaaatggatgaaattcaagcccttgtt
aagcagaaacttcaaaaggagctgactggattcttcaactcaatattgcaatctctcacc
tctgttacaagcagaaaatgcctgttgttggctggtcctttcagaacccaactttcagtt
aagcttctacagtgtttgcgaatcacaaatgcaccacatttctatggattacctgcattg
gagcggacactgcgtggaatggtctatgttactgctgttcctggttggactttgcattca
accactgaggacccctacacactttgtaagaaatatttgatgggactgctggaggtcatt
tcatcattttatgtggaatggggcggaaatgcaatgtcattcatgggtaaaggagtcaca
aagagtgcagttatctgcttgcttcagctgtcctatgagatgagaacacaagccaaagaa
aaggattggatatcactgtggtctttggcagatgaacagaacaatgaggatcaaatgcca
tcacgactaggtctggcatggctcattccactttgggttgatcgagaccctgaggtccgt
tttggcagtttgggtattggatctgccttgactctggttgaaaatggctgcattgcattt
gcagccagctgtcagaatatttctggagggttatggggcacagttctaaacatccttctg
gaccaatctgaatgcagtatggctcgtaaggaggctgcatccatactacagaatttactg
atgattcaaatgccagccacgttggaggaggccaagaattctgtctggcagagtccatgt
gttcatgatgaagagtctggtttatcactagttggattgcctgctctccaggctctactg
tatcactgccagttctatgagcgtgtggctcatatggcaaagcagtgctatctcggaagg
tacatgttcgatttgaattctccaaaacctactggcaggaattttctcaacagcaattta
gaagcagacattgactcattggaatattggagaacatcatctggtctatcaaatcacagt
cacttatcaagttttccatcaacgtcaagtactttgattttgccgtcaccacctttatca
gatagtacacctgatttccagcggcagttacacgattcagctgtgtctccaattcttatt
cctgactctccaagcaataggctaacagctcaaggtcagagtgactcagaaactacccaa
tcaccacacagtgggaactctcatgtttctgatcctccatttgagcagtgtgcagtcatt
acccttcatttctcatctgctctatgtggattgcttgctaacctactggcaactattcca
gaagatacattaaatggagtcaagcaaaaccagctccttgcagctttccatggtctggta
aacactgatttactggataggtgcctgtgggagttgggagcaccattgacttgtcttaac
cagtacgaagatatcaaagctcagattttgagccaccttcagtatctgtctgcattttct
aatctggttcaacactgtttggtcttgcatccagaacacacaattcaggatgacttactg
aagccattgttgttaaatatattcacagtactttgtatacagtgcaaggactattttggc
tgtgaggtaacatctgctatctaccaagcatggacagacttgtttatgcttttgaacaca
attctacggaaaagcgctcaggatacattcccagcagtcgtaactgcagtggcaaagcat
tgggctgctctcatagatacgatttccttgtgcattgagatgtctaccaccagatcctgt
ttgtatacagtatccttacaattcatttctctccttctgactgaagagggaaagaggcaa
tgccaaattggagcgataaatcactcaatcaactctctgactattactaagcttttagat
ggaaatgaaggggatgaatcatcaggcagccagctctgtgagagcctattaaagagcttt
gagggtaaatcatctgatgatcctctcaggaaggttgcagcaggtgctcttacagctttg
cttcctgtaagcatttgtgctcagaagcatgcattggaggctggcctcattgacagctgt
atcgagcagataaagcatacctatgtacaattcaaccttgattcactgagacctggaaaa
gtgatccaaaggaaaaaggatgataatcttagcagagagctgaaaatggtgatgcagttg
ctgaggaattgcttatatcacaatgttgaatgcaaagttgcagcatccgatgctcacctt
gggagtgcaatttatccactttggccctggtttttaatggatgacatgttgatgttggcc
actctgaaactgttatgtgtctacacggcaaacctaccagcatcatgtgtttccctgtgc
tgtggaagtggaacaccacttgtttcccattcttctcaaaggggaatggcaggtaactcc
ctagttcatatgatcatgaagctagtcttgcagaagacatgggacaacagcgcaattcaa
caaatggcatttgctgtcctttccaacttggccgtttcccatgagtgtaaaggcgtgatg
caaaagagcaatttcttgcaaaacttccttgccctaccattaccaaagacagcaggaaaa
ccactaagcactcgtgctatgctttggctgaaactgttgctgaatatatcttttgaagat
gaaggacaacagattatcctgaagatgaatggtagtctggagctgttgacagcaatgtcc
cagcacaagcacaagaacaaccagactactgccttgcttgtgcttcataatatttgcttc
aatcctgccaacaagccaaaggttctagctaatgataaaaccatgtcagtacttgctgca
tgtctagaaagtgaaaatcatacagttcaggccataggtgcctcagcactttgggcttta
cttcataactaccaaaaggccaaagttacactgaaaaatccatcaatcaagaggagagta
gatgaagctaatttttcaatcaagaagtgtaaccttgaaggttctctgaatatttatctt
atgaagtgtctgaaaaatcttgcagttttgctgaacagttag
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integrated database retrieval system
