Chiloscyllium plagiosum (whitespotted bambooshark): 122549236
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Entry
122549236 CDS
T08871
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cpla00535
]
122549236 (col14a1a)
Proteoglycans [BR:
cpla00535
]
Extracellular matrix (ECM) proteoglycans
Others
122549236 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
NDNF
FN3_Tor_3rd
Fn3_Dep-1_2nd
VWA_3
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
122549236
NCBI-ProteinID:
XP_043544622
LinkDB
All DBs
Position
4:complement(98394650..98620530)
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AA seq
1889 aa
AA seq
DB search
MLVLGHRIGTCLLLAIVAVTAHFISKAQGQVASPTRLKFTIVSQDSVKITWKAPRGRFQE
YRLTVTPVVGGKPQTLSLPKGETAAVVEGLLPNQEYMVRLFAIGNNNKESSPAQGQFIMK
ASRSRGRPGSSHTPKHKKESDSRGRDKATNEVAGTQFMCKTPAIADIVVLVDGSWSIGRL
NFRLVRLFLENLVSAFNVDSDKTRIGLAQYSGDPRIEWHLNQHSTKEAVLDAARNLPYKG
GNTLTGLALTFILENSFKPESGARAGVPKIGILITDGKSQDDVLPPAKSLRDAGIELFAI
GVKNADVNELKAIASEPDETHVYNVADFNIMNTIIESLTKTVCSRVEEQDKEIKEATGSL
SSNPVAPANLVITDVTARSFRVSWSHAPGKVEKYRVVYYSTTAGQPEEVVVDGTESTAVI
QNLMSLTEYQLAVFAIYEKAASEGLRGVVTTLALPAAADLDIYDVTHSSMRVKWEPAPTA
TGYMILYAALTGGETADEKEVKVADSVTDVELEGLTPNTEYTVTVYALYGDEASDPLTGQ
ETTLPHSPPRNLEFSEIGHSTARVTWEAASKKVNGYRIMYVKTDGATINEDEVEGSTTIF
LSNLTSLTEYTVAVFSVYDEGQSDPLTGSFTTKKVPKPLDLTISDVSTDEFKVSWKHSAD
DVTLYRLACTPLSGEEAKEFVLSGDVDTIVLDDLLPGTEYEVSLSAIYSDETESDVVAVL
ETTLQQIITTTAATTTTQRPTTAVIRSGIRNLDVGDETTFSLHVSWDPADSLVTQYRVSY
VSLKGDRAEEAVSMVMVPGRQNDLVLQPLLSDTWYKISVTPLYVDGEGTALTVSGKTLPL
SGPTNLRVSEEWYNRFRIRWDPPPTATMGYRVVYTSASASGPTLDTFVGDDVNTMVILNL
LSGTEYIIKLFATYSTGSSEALVGRAKTLYLGVTNLTPYQVRMTSMCARWQQHRHATTYR
IVIESLRDGRKEEVIVDGSTSHHCFYNLIPNTKYKISVYSQLQEIEGPAVSLLEATAPVP
TQPPAPLATTTPLPTIPPAREVCKAARANLVFLVDGSWSIGDENFVKIIGFLYNTIGALD
KIGPEGTQVAIVQFSDDPRTEFQLNSYSDKENLLNAVQRIRYKGGNTKTGRAIKHARDTI
FTIDGGLQKGIPRVLVVITDGRSQDDVDKISKEMQIDGYSIFAVGVADADYLELVNIANK
PSNRHAFFVDDFDAFRKIEDELVTFVCETASATCPLVMLGDSSIAGFKMMEMFGLVEKEY
ASVEGVSLETGSLNSFPCFRLHKDALLSQSTRNIHPEGLPSDYTITFLFRLLPDTPQEPF
ALWEILNKQNDPLVGVILDNGGKTLTYFNYDYKNEFQTVTFEDPSVKKIFFGSFHKVHVI
ISKTHAKLIVDCKQVGEKEINAAGNISTNGVEVLGRMVRSRGPRDNSAPFQLQGFDISCS
TSTANRDKCCELPGLRDEGNCPALPHACTCSQDSKGPPGPLGPPGGPGLRGPRGVKGEPG
QRGSEGLRGEIGPTGPQGQPGPQGPSGLSIQGPPGSTGEKGEKGALGPLGHQGMPGGQGR
PGRDGSPGQRGPVGKDGPIGLPGPAGPVGTPGVPGSPGATGSTGAQGSIGSPGPPGQKGE
RGPRGDAQSQNAVRMIAHQVCEQLIQSHLSRYDSILNHIPSNSVQVRASPGPPGEPGRDG
PAGPPGEQGPQGRPGFPGNPGNPGRPGERGIPGSKGDRGVPGIGKQGPRGLQGAPGPPGE
GRTGSPGAPGLPGRQGNMGRTGANGPRGPTGPPGYCDPSSCGGYNVGGGYNDPADQDIPV
VQLPPNSHQTYGPYDEQDPYIYHGSYPYPNPYSQPSYPELHPAQPDEHYDEEDTDELEAV
EVRSPGIRRFARNISKKNSVFSNTKEENQ
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgttggtccttggacacagaatagggacctgtctgctcctggccattgtagcagtgaca
gctcatttcatcagcaaggcacagggtcaagttgcctctccaacacggttaaagtttact
atagtgtctcaggacagtgttaagattacatggaaagctcctagggggagatttcaggaa
tacagattaaccgtgacaccagttgtaggtggcaaaccacagacgttgagcttaccaaag
ggtgaaacagcagcagtagtggaaggtctgctcccaaatcaggaatacatggtgcggctt
tttgcaatcggcaacaataacaaagagagttcaccggctcagggacagttcataatgaag
gcttcgcgaagcagaggcagaccagggtcatctcacacaccaaaacacaaaaaggagtca
gactcccgtggcagagataaagcaaccaatgaagttgcaggcacccagtttatgtgcaag
actccagctattgcagacatcgtggtccttgtggatggttcctggagcattggtcgactt
aatttccgtcttgtccgactgtttttggagaacttggttagtgctttcaatgtagattct
gacaaaacaagaataggattggctcagtacagtggagacccaaggatagaatggcatctg
aatcaacacagtacaaaggaagctgtactggatgccgccagaaatcttccatacaagggc
gggaatactcttacaggacttgccttaacgtttatccttgagaatagctttaaacctgaa
tctggagctcgagcaggtgtgccgaagattggaatcttgatcactgatgggaagtctcag
gatgatgtccttccaccagccaaaagtttacgtgatgctggcattgagctctttgctatt
ggtgtgaaaaatgcagatgtgaatgagctaaaggcaatcgcctctgaacccgacgagaca
catgtctacaatgtagctgactttaatatcatgaacacaattattgagagccttactaaa
acagtgtgctcacgtgtggaagaacaagacaaagaaataaaagaagcaactggaagtttg
agctcgaacccagtggcacctgcaaaccttgtaataactgacgtaacagctcggagcttc
cgtgtcagctggtcgcacgcacctgggaaagtggaaaagtatcgtgtggtttattactct
accacagcaggtcagcccgaagaggtggttgtggacggaacagaatcaacagctgtcatt
cagaatctgatgtccctgacggagtatcagctcgcggtatttgccatctatgagaaggca
gccagtgaaggtttacgtggggtcgtcaccacattggcgctacctgcagctgcggatttg
gatatctacgatgtgactcacagcagcatgagagtcaaatgggaacctgctccgactgct
acaggttacatgatcctttatgctgcactcactgggggagagacagctgatgaaaaagag
gtaaaagtggccgattcagtcacagacgtagaactggagggattgaccccaaacactgaa
tatacagtgacagtgtatgccttgtatggtgatgaagcaagtgacccactgactggacaa
gaaacaacattgccacacagtcctcctcgaaacctggaattctcagaaatcgggcacagc
actgccagggtcacctgggaagcagcttcaaagaaagttaatggatatcgaatcatgtac
gtgaaaaccgacggtgcaacaataaacgaggatgaagttgaagggtcaacgacaattttc
ttaagtaacctgacatcgcttacagaatatacagttgctgttttctccgtttacgatgag
gggcagtcagatcctctcacaggcagttttaccacaaagaaagttccaaagcccttggac
ttaacaatcagcgatgtttctacagatgagttcaaagttagttggaagcattctgctgat
gacgttactttatatcgattggcttgcacccccctgagtggggaggaggcgaaagagttt
gttttgagtggggatgtagacacaattgttctcgacgatttattgcctgggacagagtat
gaggtttctctctctgcgatttacagtgatgagacagaaagtgatgtcgtggctgtactg
gagacaacacttcagcagataatcacaacaacagcagctacaacaacaactcagagacct
actacagcagttattcgatctggaataagaaatctagatgtgggtgatgaaaccacgttt
agcctacatgtgtcctgggacccagctgattcccttgttacacagtacagagtgtcctat
gtatctctaaaaggagaccgcgcagaagaagcggtaagcatggtgatggttcctggaagg
caaaatgacctcgtgctccagcctctactctcagacacttggtataaaatttctgtgaca
ccactctacgttgatggagagggcactgctctcactgtcagtggcaagacgttgccactc
tctggaccaactaacctgcgtgtctcggaggaatggtataatcgtttccgaattagatgg
gaccctcctccaacagcgacaatgggttacagagtggtttacacttctgcctcagcatct
ggtcctaccttggatacatttgtgggagatgatgtgaacacaatggtgatcctcaatctg
ctcagtggcactgaatacatcattaaactctttgcaacatactccaccggttccagtgaa
gcacttgttggcagagccaaaacattgtacctcggtgtgacaaatcttaccccataccaa
gtccgaatgaccagcatgtgtgcacgttggcagcaacatagacatgcaacaacttacaga
attgtcattgaatctctacgagatggaaggaaggaagaagtgattgttgatggaagcact
tcccatcactgtttctacaatctcattccaaacaccaagtacaaaattagtgtctattca
caactgcaagagatagaaggaccagctgtgagtctgctagaggcaacagctccagttcca
acccagccacccgcacctcttgcgacaacaaccccattgcctacgattcctcctgcccgg
gaagtttgtaaagctgccagagcgaacttggtgtttctcgtggatggatcatggagtatc
ggcgatgagaattttgtcaagatcattggctttctgtacaatacgattggagctctggac
aagattggtcctgagggaactcaagttgcaatagtacaattcagtgatgatcccagaaca
gaatttcaactcaactcatacagtgacaaagagaatcttctcaatgctgtccagcggatt
agatacaaaggtggaaatactaagacaggcagagctatcaaacatgccagggatactatc
ttcaccattgatggaggactgcagaagggcattcccagagtcctggtggtaattacggac
ggtcgatcgcaagatgacgttgacaagatttctaaagagatgcagattgatggttacagt
atctttgcagtgggtgttgctgacgctgattacttggagcttgtcaatattgcaaataaa
cccagtaacaggcatgcgttctttgtggatgattttgatgccttcaggaagatagaagat
gagcttgttacttttgtctgtgagacagcgtctgcaacttgtccattggttatgcttggt
gattccagtattgcagggtttaagatgatggagatgttcgggttggttgagaaggaatat
gcttctgttgaaggcgtgtcactagagactggctctctcaatagctttccctgttttaga
cttcacaaagatgctcttctatcacaatcaaccaggaacatccaccccgaaggattgcct
tctgattacaccatcactttcctattccgcctgctgcctgacactccacaggaacccttt
gcactctgggagattctaaacaaacaaaacgatcctctggttggagtcatcttggacaat
ggtgggaaaaccctcacttactttaactatgattacaagaatgagtttcagacagtcact
tttgaggatccaagtgtcaagaagattttctttggcagttttcataaggtgcatgtgata
attagcaaaacccatgcaaaactgattgttgactgcaaacaagtcggtgagaaggaaatc
aatgcagcaggaaacattagcaccaatggagtcgaagtattgggccgaatggtacggtca
aggggcccccgggataattcggcaccgtttcaactgcaaggatttgatatctcctgttcg
acttccactgcaaacagggacaagtgttgcgaacttccaggactgagggatgaaggcaat
tgcccagctcttccacatgcctgcacttgttctcaagacagcaaaggaccacctggaccc
ctgggacctcccggtggcccaggtttgagaggcccaagaggagtgaagggagaaccaggt
caaaggggatctgaaggtctccgtggtgagattggacctactggcccccagggtcaacct
ggaccccaaggaccaagtggactttccattcagggaccgccgggcagcactggtgaaaaa
ggtgagaaaggagctctcggtcctctcggccaccaggggatgccaggagggcaagggaga
ccaggacgcgatggttcaccaggtcaaaggggtcctgttggtaaagatggtcctatagga
ttaccaggaccagcggggcctgtgggaactccaggtgtcccaggctctcccggagctaca
ggcagcactggagcccagggcagcatcggatctcctggtccgcctggtcaaaagggagag
agaggtccaagaggtgatgctcagtcacaaaatgccgttcgtatgattgctcaccaagtg
tgtgagcagctcatccaaagccacttgtcaaggtacgactctattctcaaccacattccc
agcaactcggttcaggtgcgggcatctccaggccctccgggggagcctggccgtgatggc
cctgcaggtcctccaggagaacaaggacctcaaggtcgaccaggtttccctggcaaccct
ggcaatcctggcagaccaggagaaagaggtataccaggttcgaaaggagatcgtggagtc
ccaggtattggcaaacagggaccaagaggactacaaggtgcaccaggtcccccaggggaa
ggacgaacaggtagtccaggtgcaccaggtctcccagggcgacagggtaatatgggacgt
acaggggctaacggcccaagaggaccaactggcccaccaggatactgtgatccatcttcc
tgtggtggctacaatgttggaggtggatacaatgatccagccgatcaagacattcctgta
gtacaattgcctccaaactcccaccaaacctatggcccttatgatgagcaagatccatac
atatatcatgggtcctacccctatccaaacccatattcccagccctcttatcctgagcta
catcctgctcaaccagatgaacattatgacgaagaggatacagatgaattggaagctgtt
gaagttcgatcacctggaatcagacggtttgcgaggaacatatcaaaaaagaacagtgtc
ttttcaaacacaaaggaggagaaccagtga
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integrated database retrieval system
