Chiloscyllium plagiosum (whitespotted bambooshark): 122549315
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Entry
122549315 CDS
T08871
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04140
Autophagy - animal
cpla04148
Efferocytosis
cpla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122549315 (vps41)
04148 Efferocytosis
122549315 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122549315 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpla04131
]
122549315 (vps41)
Membrane trafficking [BR:
cpla04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
122549315 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
Beta-prop_HPS5
zf_RING_Vps8_fungal
WD40_WDHD1_1st
WD40_CDC20-Fz
Vps39_1
Beta-prop_THOC3
zf_RING_Vps8
TPR_7
WD40_Prp19
Beta-prop_EML_2
Frtz
Beta-prop_WDR3_2nd
Pep3_Vps18
Beta-prop_RIG_2nd
zf-RING_5
Beta-prop_WDR3_1st
Beta-prop_WDR19_1st
TPR_12
Beta-prop_ACSF4
VPS18_RING_C
EGF_Tenascin
U-box_ZFPL1
Motif
Other DBs
NCBI-GeneID:
122549315
NCBI-ProteinID:
XP_043544864
LinkDB
All DBs
Position
4:110414475..110580107
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AA seq
846 aa
AA seq
DB search
MAEVGQVTQSYEGSTDESEDEESEEEPKLKYERLANGVTDILQKDAASCMTVHDKFLALG
THHGKVYLLDVQGNVTQRFDISSVKVNQVSLDESGEHIGICSEDGKVQVVGLYTREGFHE
NFDCPIKIVALHPQFGRSSSKQFITGANKLLLYERNWLNRWKTTILHEGEGTISNIKWRG
NLVAWSNSVGVKIYDACSKQRITNISRDNTNFRPDMYLCSLCWKDNITLIIGWATSVKVC
VVKERDPTDLRDLPTRYVEIVSAFESEFHISGLAPLGERLVLLMYVNETLEQTDKEHCAR
PRLDIIHHLPDSYEEISSDALSVRGFQENECRDYSLEHSDGESLFYIISPRDIVVAKERD
QDDHIEWLLGKKKYEEAMMAAEISQKNIKRHNILDIGRAYVNYLVDKGDYHGAARKCQKI
LGKNMDLWENEVYRFKKIGQLKAISQYLPRGDLRLRPAIYEMILYEFLESDYEGFASLIR
EWPGDIYNNMTVVRSVLDHLDRAPSNRTLLTTLAELYTYDQRYDKALEIYLKLRHKDVFQ
LIHKHNLFSSIKDKIVLLMEFDKEQAVNMLLDNEDKISIDKVVEELKDQLELQHVYLHNL
FKRDHHKGQKFHERQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVFLLS
RMGNSRRALQMITEELQDVDKAIEFAKEQDDAELWEDLISHSIDKPPFITGLLNNIGTHV
DPILLIYRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKIIVSDCLTLLKKMHKTQLR
GVCVDEENICESCHSPILPTDIAKPFSVVVFHCRHMFHKDCLPTPGMFCNICSAKRRRPA
GGLGEA
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtcggtcaggtgactcaaagctacgaagggtcgacagatgaatctgaggac
gaagaaagtgaagaggaaccaaagcttaaatatgaaagactagctaatggagtgacagat
attctgcaaaaagatgctgcaagttgtatgactgtgcatgacaagtttttggcgctggga
acacatcatggtaaagtctatttactggacgtgcagggaaatgtgacacagcgatttgac
attagttccgtgaaggtgaatcaagttagcttggatgaaagtggagaacatattggaatt
tgttcagaagatggcaaggtacaggtggttggattgtatacgagggaaggatttcatgaa
aactttgactgtcctatcaaaatagtggcccttcacccacagtttggcagatccagtagt
aagcaattcatcacaggggcaaacaagttgctcctgtatgaacgaaactggttgaacagg
tggaaaacaactatattacatgaaggagaaggcaccatttcaaacatcaaatggaggggc
aatctggtcgcatggtcaaacagtgtgggagtcaagatatatgatgcttgctcaaagcaa
cgaatcacaaacatatcccgagacaacacaaactttcgtcctgatatgtatctctgcagt
ctctgctggaaagacaacataacactcatcattggctgggcaacatctgttaaggtatgt
gtggtgaaggagcgtgatcctacagacttaagggatttgcccactcgttatgttgaaatt
gtgtctgcctttgagtcagagtttcacattagcggacttgcaccacttggcgagcgtcta
gttctcttaatgtacgtgaatgagacgttggaacaaacggataaagaacactgtgcaaga
cctcgccttgacataattcatcacttgcctgattcgtatgaggaaatatcctctgatgct
ctgtccgtaagaggtttccaagaaaatgaatgcagagactacagcttagaacactctgat
ggtgaatcgctgttttatatcattagtccacgagatattgtagtggcgaaggagcgggat
caagatgatcacattgaatggctccttggaaaaaagaaatatgaagaagctatgatggca
gctgaaatcagccagaagaatataaaaagacataatatattggatattggcagagcctat
gtaaactatctagtggacaaaggagactatcatggtgctgcaagaaaatgccagaagatt
cttggcaaaaacatggatctctgggaaaatgaagtgtaccgatttaaaaagataggtcaa
ctaaaagcaattagtcagtacttacccagaggtgacctacgcctgagacctgctatatat
gaaatgatcttgtatgagttcctggagagtgattatgaggggtttgcatccttgataaga
gagtggccaggtgacatttataacaatatgactgtagtccgctctgtgttggatcatctg
gatcgggctccaagtaacagaacattgttgacgacactagcagaattgtacacttatgac
cagcgttacgacaaggctcttgaaatttacttaaaattgcgacataaagatgtcttccag
ctcatacacaagcacaatctcttcagctccatcaaggataagattgttctactcatggag
tttgataaggagcaagcagtcaatatgctcttggacaatgaagataaaatttcaattgac
aaagttgtggaggaactgaaggatcaactagaactgcagcatgtgtatttgcataacctg
ttcaagcgagatcaccataaaggacagaagttccatgaacgacagatcagcctctatgct
gagtatgatcggccaaatctgttacccttcttgagagacagcacccactgtccactggaa
aaagcacttgaaatttgtcagcagcggaactttgttgaagagacagtttttctcttgagt
agaatgggtaatagtcggcgtgctctacagatgataactgaggaactgcaagatgtagac
aaggccattgagtttgccaaggagcaagatgatgctgagctatgggaggatcttatctcg
cattccatcgacaagccaccatttataactgggctgttgaacaatattgggacccatgtt
gatcctatcctcttgatctatcgaataaaggaaggtatggagattcctaacctgcgggat
tcattagtgaagatccttcaagattataacttgcagattttgctacgagaaggatgtaaa
aaaattattgtttctgattgtctgacattgctgaaaaaaatgcataaaacccagctgaga
ggtgtttgtgttgacgaggagaatatttgtgaatcatgccattctcccatattgcctaca
gacattgcaaaaccattcagtgtggtggtcttccactgcagacatatgtttcataaggat
tgccttccaactcctggcatgttctgtaacatctgcagtgcaaaacgtcgaaggcctgct
ggtggactgggtgaggcttaa
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integrated database retrieval system
