Chiloscyllium plagiosum (whitespotted bambooshark): 122549510
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Entry
122549510 CDS
T08871
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122549510
09123 Folding, sorting and degradation
03018 RNA degradation
122549510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122549510
03041 Spliceosome [BR:
cpla03041
]
122549510
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122549510
mRNA degradation factors
5'-3' decay
Lsm complex
122549510
Spliceosome [BR:
cpla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122549510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
122549510
NCBI-ProteinID:
XP_043545303
LinkDB
All DBs
Position
4:103522500..103568199
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AA seq
84 aa
AA seq
DB search
MFKGDEEPELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT
KLDQILLNGNNITMLIPGGEGPEV
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atgtttaagggagacgaggagccagagttggtggacaaatgcattggctcgcggattcat
attgttatgaaaaatgataaggagattgtcggaacactgcttggttttgatgattttgtc
aacatggtgcttgaagatgttactgaatttgagatcacaccagaaggcagaagaatcaca
aaactggaccaaatcctattgaatggaaataacataacgatgcttattcctggtggtgaa
ggtcctgaagtatga
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