KEGG   Chiloscyllium plagiosum (whitespotted bambooshark): 122549812
Entry
122549812         CDS       T08871                                 
Symbol
rpa3
Name
(RefSeq) replication protein A 14 kDa subunit
  KO
K10740  replication factor A3
Organism
cpla  Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03030  DNA replication
cpla03420  Nucleotide excision repair
cpla03430  Mismatch repair
cpla03440  Homologous recombination
cpla03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cpla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122549812 (rpa3)
   03420 Nucleotide excision repair
    122549812 (rpa3)
   03430 Mismatch repair
    122549812 (rpa3)
   03440 Homologous recombination
    122549812 (rpa3)
   03460 Fanconi anemia pathway
    122549812 (rpa3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpla03032]
    122549812 (rpa3)
   03400 DNA repair and recombination proteins [BR:cpla03400]
    122549812 (rpa3)
DNA replication proteins [BR:cpla03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    122549812 (rpa3)
DNA repair and recombination proteins [BR:cpla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     122549812 (rpa3)
   MMR (mismatch excision repair)
     122549812 (rpa3)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     122549812 (rpa3)
SSDB
Motif
Pfam: Rep_fac-A_3 DUF5818 DUF7223
Other DBs
NCBI-GeneID: 122549812
NCBI-ProteinID: XP_043545823
LinkDB
Position
5:39758619..39773198
AA seq 121 aa
MADDLEGPRTRINTSLVSRFTGRAVCFVGRVQKVHPSGTSFVLSDGDGKNVTVEMTDPLD
EELSGVIEVVGKITPKATIKAAYYAPFREDKSSFDLHLYNEALNIIHEFPQYYPFSVTAS
G
NT seq 366 nt   +upstreamnt  +downstreamnt
atggcggacgatctggagggtccgcgcacgaggattaacacgagcttggtctcgcggttt
accgggagagccgtttgcttcgtgggcagagttcagaaggttcacccctctgggacttcc
tttgttctgtcagatggtgatgggaagaatgtaacagtagaaatgactgatccacttgat
gaggagttgagtggagtcattgaagtggttggaaagatcacaccaaaagccaccatcaag
gctgcatattatgctcctttccgagaggacaaaagcagttttgatctccatctttacaat
gaagcgctgaacatcatacatgaatttccacagtactatccctttagtgttacagcaagt
ggttga

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