Chiloscyllium plagiosum (whitespotted bambooshark): 122549842
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Entry
122549842 CDS
T08871
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpla04131
]
122549842 (vps50)
Membrane trafficking [BR:
cpla04131
]
Protein recycling
Others
EARP complex
122549842 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
122549842
NCBI-ProteinID:
XP_043545881
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All DBs
Position
5:complement(44214127..44397049)
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AA seq
972 aa
AA seq
DB search
MQKIKSLMSRQGLKSPQESVTEVKSPVENFRIPSKEELRELREIPSDPQAEQEIINSIEE
IYFNNDSFDVVNYELEKLPSVLNLQDLEEYRDKLEQQQAAVSKKVADLILEKQAAYVKEL
ERVTSLQANLQLAAVICTNARRQLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKT
LQRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDV
ALSKTCKHFEVSHYTKVQLAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGN
SDTKFQKLQYKDLCTHITPDSYIPCLSDLCKALWEVMLSYYRTMSWHDEHDREESAPAAD
GRTEISTDDANFNRSYVKKKLEHGLSRIWQDVQLKAKTYLLGTDLSSFKYDDFIFVLDII
SSVICLQTRLMQVGEEFCGSKSEVLQESIRKQSVNYFKSYHRIRLEELRMFLENETWELC
PVKSNFSILQLHEFKFMRQSRSPSMSPSKQYTTTPATTGSLFDQYQNGGNPFEHQADIKD
DESEDVLAANGYESDELEKSVYQDYDSDSDVPEELKRDYVDEQTGDIPVKSISKETLKGR
KRSDYYLNKGNTLILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCMSQLFDYYLYAVYT
FFGREDMYESTGLGLISSRLRTTLNRIQESLIDLEAPPETAGPLTATEERKEKVPSPHLS
HLVVLNSAETLYGLAERVVATESLVFLADQFECLQPHLDAMMPSAKKPFLQQFYSQTVST
ASELRKPIYWIVAAKAIDYEQMLHLMANVKWDIKEIMSQHNVYIDTLLKEFEQFNKKLSE
VSKRVRIPLQVSNVLWEHCIRLANRTIVEGYANAKKCSNEGRALMQLDFQQFLMKLEKLT
DIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKL
MAAIDETDRPKR
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaataaaatcattgatgtcccgccagggtctgaaaagcccccaggaaagtgta
acagaggttaaatctccagttgaaaactttcgaatacccagcaaggaagaactaagagaa
ttaagagaaattcccagtgaccctcaagcggagcaagaaataattaacagcattgaagaa
atttatttcaacaatgactcatttgatgttgtgaactatgagctggagaaacttccctct
gttctcaatctacaagaccttgaagaatatagagataaactggaacaacagcaagctgct
gtatcaaagaaagtagcagatttaatccttgaaaaacaagctgcatatgtgaaggaactt
gaaagagttacatcattgcaggccaatcttcaactggctgctgtcatatgtacaaacgca
agaaggcagctaaatattgccaaggaaggctttacacaagctagcctggggttgcttgcg
aatcaaagaaagagacagctgttgattggactactgaagtctttacgcacaattaaaaca
ctgcaaaggacggatgtacggttaagtgaaatgttggaggaagaagattatcctggagca
atacaactctgtttggaatgtcagaaagcagctagcacattcaaacactacagctgcata
agtgaactgaattcaaaattacaagatactttggaacaaatagaggaacaattagatgtt
gcactgtcaaaaacctgcaagcactttgaagtcagtcattataccaaggtccaacttgct
tacagattgctgggaaaaacccagactgcaatggaccagctacacatgcatttcactcag
gctatccataacaccgtcttccaggttgtacttggatacgtggaattgtgtgcaggaaat
tctgacaccaagtttcagaagctgcaatataaagatctttgcacgcatattactcctgac
agctacatcccatgcctgtctgacctctgcaaagctctgtgggaagtcatgctaagctac
tatcgaaccatgtcgtggcatgatgaacatgaccgtgaagagtctgccccagctgctgat
ggccgtactgagatttccacagatgatgccaactttaatcgaagttatgtgaaaaagaag
ttggagcatggcctttctcggatctggcaggatgttcaattaaaagcaaaaacatatttg
cttggaacagatttatccagtttcaagtatgacgattttatttttgtactggacattatt
agcagtgttatttgtttgcaaaccagactgatgcaagttggtgaagaattttgtggcagt
aaatcagaggtgttgcaggagtctattcgaaaacaaagtgtgaattattttaaaagctat
cacagaatacgccttgaagagctacgaatgtttttagaaaatgaaacttgggaactatgt
cctgtgaaatcaaacttcagtattttgcaattgcatgagtttaaatttatgcggcagtca
cgttccccttctatgtcacccagcaagcaatatacaacaacgccagccacaacgggatct
ctatttgaccagtatcaaaatggtggaaatccgtttgaacaccaggcagacatcaaagat
gatgaatcagaagatgttcttgctgctaatgggtatgaatctgatgagttggagaaaagt
gtttatcaagactatgatagtgacagtgatgttccagaagagcttaaaagagactatgtg
gatgagcaaactggtgacattcctgtgaaaagcatctcaaaagaaaccctgaaaggtagg
aagaggtcggactactatctgaacaagggcaatacactcattttaacaaacactactctg
aatgtaataaggcttgttggaaaatacatgcaaatgatgaatatcctgaagccaattgct
tttgatgttatccactgtatgtcacaactatttgactattacttgtatgctgtatatacg
ttttttggacgggaggacatgtatgaatccacaggactgggactcattagcagcagatta
cgaaccacattgaatagaatacaagagagccttattgatctggaggcaccacctgaaacc
gctggtcctttaacagcaacagaagagaggaaagaaaaggttccaagcccacacctcagc
catctcgttgttttaaattctgctgaaacactatacggtcttgcagaaagggtcgttgct
acagaatctttggtatttctagctgatcaatttgaatgtttgcagccgcatcttgatgcc
atgatgccctcagccaagaagccttttttgcagcagttttattcacagactgtgtcaact
gcaagtgagctgcgcaaaccaatttactggattgtggctgccaaagccattgattatgaa
cagatgctgcatcttatggctaatgttaaatgggatatcaaagaaattatgtcacagcac
aacgtatatattgatactcttcttaaggagtttgaacagttcaacaagaagctatctgag
gtttccaaacgagtgcgtataccactgcaggtctctaatgtcctctgggagcattgtatt
cggctggcgaacagaaccattgtcgaaggttacgcaaatgcaaaaaaatgtagtaatgag
gggcgtgctttgatgcaactggactttcaacagtttctaatgaagttggagaagctgaca
gacatcaggccaattccggataaagaatttgtagaaacctacattaaagcctattatttg
actgaaaatgacatggaaagatggattaaagaacacagggaatattcaaccaagcagcta
accaacctagtgaatgtttgtttgggctcgcatataaataaaaaagcacggcagaagctg
atggcagctattgatgaaactgacaggcctaaaagatag
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