KEGG   Chiloscyllium plagiosum (whitespotted bambooshark): 122550083
Entry
122550083         CDS       T08871                                 
Name
(RefSeq) integrin beta-1-like isoform X1
  KO
K05719  integrin beta 1
Organism
cpla  Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03271  Virion - Rotavirus
cpla04145  Phagocytosis
cpla04510  Focal adhesion
cpla04512  ECM-receptor interaction
cpla04514  Cell adhesion molecule (CAM) interaction
cpla04517  IgSF CAM signaling
cpla04518  Integrin signaling
cpla04530  Tight junction
cpla04810  Regulation of actin cytoskeleton
cpla04820  Cytoskeleton in muscle cells
cpla05100  Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:cpla00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03271 Virion - Rotavirus
    122550083
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    122550083
   04514 Cell adhesion molecule (CAM) interaction
    122550083
   04517 IgSF CAM signaling
    122550083
   04518 Integrin signaling
    122550083
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    122550083
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    122550083
   04530 Tight junction
    122550083
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    122550083
   04810 Regulation of actin cytoskeleton
    122550083
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05100 Bacterial invasion of epithelial cells
    122550083
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cpla04131]
    122550083
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cpla04147]
    122550083
   04515 Cell adhesion molecules [BR:cpla04515]
    122550083
   04090 CD molecules [BR:cpla04090]
    122550083
Membrane trafficking [BR:cpla04131]
 Endocytosis
  Phagocytosis
   Integrins (complement receptors)
    122550083
Exosome [BR:cpla04147]
 Exosomal proteins
  Proteins found in most exosomes
   122550083
Cell adhesion molecules [BR:cpla04515]
 Integrins
  Integrin beta subunits
   122550083
CD molecules [BR:cpla04090]
 Proteins
  122550083
SSDB
Motif
Pfam: Integrin_beta EGF_integrin PSI_integrin I-EGF_1 EGF_2 EGF_Teneurin EGF_TEN bHLH_LHW Aminotran_3
Other DBs
NCBI-GeneID: 122550083
NCBI-ProteinID: XP_043546547
LinkDB
Position
5:89410818..89690515
AA seq 709 aa
MGQASNAAQEMDLKTNLGTAIVCCWMWLGLVHSDGRVCLEANAESCEECIQAGQNCGWCS
QAEFLRHGVLPMARCDDIESLKRRGCPMEHIENPKGSVRIISDKNLTGVENGKKVNSEDV
SQIQTQKLIVKLRPGEPQTFSLQFQRAEDYPIDLYYLVDLSLSQQDDLENMKRLGIELER
KLQKTTTDFRIGLGILQKNSCTAGEICGSQFSFKNVLSLTSDGARFNTLLNSQTFTASQN
SSEDGTDAIMQAVVCGDTTGWRSVTKMLVYYTNTGLHFARDGKGSGLLPNDGKCHIDSQG
VYTLNHHHDHPSISQLAQKLADNNIHLFFAVNEEFKDIYKMFHDSIPKSEVGILTPNSSD
VIKLILDAYHALSFAVILENSSLPEGVTMHSTVYCNNNTVHTEEDSSKCSGIHTGDKVKF
DIHITAKKCPKNEQEATIQLKPTGFNEKVEITLKFLCECECHKQEITKRPDCNEGNGKIE
CGVCKCNEGRIGRFCECNIDEIYREDMLASCRKDNASLVCSGNGDCICGECECKKRENPN
EYISGKYCECDNFSCDRFNGLLCGGNGICHCGKCECLPTFTGSACHCSIDMDSCKSPNGR
ICNNKGICECGQCRCTEGFTGPTCEHCPTCSGVCTDLKDCVLCKAFKKGPKKEICDQCGF
EVTLVDRPDELPQSLCRFMDPDIGNFCFSYFFNNQNVPEVHVVKIPVWC
NT seq 2130 nt   +upstreamnt  +downstreamnt
atgggacaagcttccaatgctgcacaggagatggatttgaaaactaaccttggcacagcg
attgtttgttgctggatgtggctgggtctagttcactcagatggcagggtgtgtttagaa
gccaatgcagaatcatgtgaggaatgtatacaagctggacaaaattgcggatggtgttca
caagctgaattcttgaggcatggggtactaccaatggcacgctgtgatgatattgaatca
ttaaaaagaagaggatgtccaatggaacatattgaaaatcctaaaggttctgtgagaatt
attagtgataaaaatctgactggtgtggaaaatgggaagaaagtgaattccgaggatgta
agccagattcaaacacagaagcttattgtgaaattacgaccaggtgagcctcaaaccttc
tcactgcagtttcagagagctgaagactatcccattgatctttactaccttgtggacctc
tccctttctcagcaggatgacttagaaaacatgaaaaggctaggaattgagctggagaga
aaattgcagaagacaactactgatttcaggattgggcttggtatcttgcagaaaaattct
tgtacagctggagaaatctgtggaagtcaattcagtttcaagaatgttctatcactgacc
tctgatggggctagattcaatacactcctcaacagtcagactttcactgcaagtcagaat
tcttcagaagatggtactgatgctataatgcaagctgtggtctgtggggatacaactggt
tggaggtctgtcacaaaaatgcttgtctattacactaatacaggactccattttgctaga
gatggtaaaggcagcggtttgttgcccaatgatggtaaatgccacattgatagtcaaggt
gtatatacattgaatcatcatcatgatcatccatccatttctcagttggcacaaaagctt
gcggacaataacatccatcttttttttgctgttaacgaagagttcaaagacatttacaag
atgtttcacgattcaattccaaaatctgaagtgggcattctgacaccgaattctagtgac
gtaatcaagttaatccttgacgcttatcatgctttatcttttgctgtgatcttggagaac
agctcattgccagaaggagtgacaatgcattctacagtctactgtaataacaatactgtt
catacagaggaagacagctccaagtgttcagggattcacactggtgacaaggtgaaattt
gacatacatattacagcaaagaaatgcccaaaaaatgagcaggaagcaactattcagctc
aagccaacgggttttaatgagaaagtggaaatcactttgaagtttttatgtgaatgtgag
tgccataaacaagaaatcacaaaacgcccagattgcaatgaggggaatggaaaaatagag
tgtggagtatgcaaatgcaatgaaggacgcattggtcgattttgtgaatgcaacattgat
gaaatatatcgtgaggatatgcttgcctcctgtagaaaagataatgcatctctagtttgc
agtggtaatggagattgtatctgtggggaatgtgaatgcaaaaagagggaaaatcccaat
gaatacatctcaggcaaatattgcgaatgtgataacttcagttgtgaccgattcaatgga
ttgctctgtggaggaaatggcatttgccattgtggaaaatgcgagtgcctacctactttt
acaggcagtgcctgtcattgttcaatagatatggattcatgtaaatcaccgaatggacgg
atatgtaataacaaaggaatatgtgaatgtggtcagtgtagatgcacagaggggttcaca
ggaccaacatgtgagcactgtccaacttgttctggtgtctgtacggaccttaaggactgt
gtcctgtgtaaagcctttaaaaaaggacccaagaaagaaatctgtgatcagtgtgggttt
gaagtaactctcgtggatcgtccagatgagttgccacaatcgctttgccggtttatggac
ccagacatcggcaacttctgcttttcatatttttttaacaaccagaatgttccagaagtt
catgttgttaaaatcccagtttggtgctaa

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