Chiloscyllium plagiosum (whitespotted bambooshark): 122550083
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Entry
122550083 CDS
T08871
Name
(RefSeq) integrin beta-1-like isoform X1
KO
K05719
integrin beta 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03271
Virion - Rotavirus
cpla04145
Phagosome
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
cpla04514
Cell adhesion molecules
cpla04530
Tight junction
cpla04810
Regulation of actin cytoskeleton
cpla04820
Cytoskeleton in muscle cells
cpla05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
122550083
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122550083
04514 Cell adhesion molecules
122550083
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
122550083
09144 Cellular community - eukaryotes
04510 Focal adhesion
122550083
04530 Tight junction
122550083
09142 Cell motility
04820 Cytoskeleton in muscle cells
122550083
04810 Regulation of actin cytoskeleton
122550083
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
122550083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpla04131
]
122550083
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpla04147
]
122550083
04515 Cell adhesion molecules [BR:
cpla04515
]
122550083
04090 CD molecules [BR:
cpla04090
]
122550083
Membrane trafficking [BR:
cpla04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
122550083
Exosome [BR:
cpla04147
]
Exosomal proteins
Proteins found in most exosomes
122550083
Cell adhesion molecules [BR:
cpla04515
]
Integrins
Integrin beta subunits
122550083
CD molecules [BR:
cpla04090
]
Proteins
122550083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
EGF_integrin
PSI_integrin
I-EGF_1
EGF_2
EGF_Teneurin
EGF_TEN
bHLH_LHW
Aminotran_3
Motif
Other DBs
NCBI-GeneID:
122550083
NCBI-ProteinID:
XP_043546547
LinkDB
All DBs
Position
5:89410818..89690515
Genome browser
AA seq
709 aa
AA seq
DB search
MGQASNAAQEMDLKTNLGTAIVCCWMWLGLVHSDGRVCLEANAESCEECIQAGQNCGWCS
QAEFLRHGVLPMARCDDIESLKRRGCPMEHIENPKGSVRIISDKNLTGVENGKKVNSEDV
SQIQTQKLIVKLRPGEPQTFSLQFQRAEDYPIDLYYLVDLSLSQQDDLENMKRLGIELER
KLQKTTTDFRIGLGILQKNSCTAGEICGSQFSFKNVLSLTSDGARFNTLLNSQTFTASQN
SSEDGTDAIMQAVVCGDTTGWRSVTKMLVYYTNTGLHFARDGKGSGLLPNDGKCHIDSQG
VYTLNHHHDHPSISQLAQKLADNNIHLFFAVNEEFKDIYKMFHDSIPKSEVGILTPNSSD
VIKLILDAYHALSFAVILENSSLPEGVTMHSTVYCNNNTVHTEEDSSKCSGIHTGDKVKF
DIHITAKKCPKNEQEATIQLKPTGFNEKVEITLKFLCECECHKQEITKRPDCNEGNGKIE
CGVCKCNEGRIGRFCECNIDEIYREDMLASCRKDNASLVCSGNGDCICGECECKKRENPN
EYISGKYCECDNFSCDRFNGLLCGGNGICHCGKCECLPTFTGSACHCSIDMDSCKSPNGR
ICNNKGICECGQCRCTEGFTGPTCEHCPTCSGVCTDLKDCVLCKAFKKGPKKEICDQCGF
EVTLVDRPDELPQSLCRFMDPDIGNFCFSYFFNNQNVPEVHVVKIPVWC
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagcttccaatgctgcacaggagatggatttgaaaactaaccttggcacagcg
attgtttgttgctggatgtggctgggtctagttcactcagatggcagggtgtgtttagaa
gccaatgcagaatcatgtgaggaatgtatacaagctggacaaaattgcggatggtgttca
caagctgaattcttgaggcatggggtactaccaatggcacgctgtgatgatattgaatca
ttaaaaagaagaggatgtccaatggaacatattgaaaatcctaaaggttctgtgagaatt
attagtgataaaaatctgactggtgtggaaaatgggaagaaagtgaattccgaggatgta
agccagattcaaacacagaagcttattgtgaaattacgaccaggtgagcctcaaaccttc
tcactgcagtttcagagagctgaagactatcccattgatctttactaccttgtggacctc
tccctttctcagcaggatgacttagaaaacatgaaaaggctaggaattgagctggagaga
aaattgcagaagacaactactgatttcaggattgggcttggtatcttgcagaaaaattct
tgtacagctggagaaatctgtggaagtcaattcagtttcaagaatgttctatcactgacc
tctgatggggctagattcaatacactcctcaacagtcagactttcactgcaagtcagaat
tcttcagaagatggtactgatgctataatgcaagctgtggtctgtggggatacaactggt
tggaggtctgtcacaaaaatgcttgtctattacactaatacaggactccattttgctaga
gatggtaaaggcagcggtttgttgcccaatgatggtaaatgccacattgatagtcaaggt
gtatatacattgaatcatcatcatgatcatccatccatttctcagttggcacaaaagctt
gcggacaataacatccatcttttttttgctgttaacgaagagttcaaagacatttacaag
atgtttcacgattcaattccaaaatctgaagtgggcattctgacaccgaattctagtgac
gtaatcaagttaatccttgacgcttatcatgctttatcttttgctgtgatcttggagaac
agctcattgccagaaggagtgacaatgcattctacagtctactgtaataacaatactgtt
catacagaggaagacagctccaagtgttcagggattcacactggtgacaaggtgaaattt
gacatacatattacagcaaagaaatgcccaaaaaatgagcaggaagcaactattcagctc
aagccaacgggttttaatgagaaagtggaaatcactttgaagtttttatgtgaatgtgag
tgccataaacaagaaatcacaaaacgcccagattgcaatgaggggaatggaaaaatagag
tgtggagtatgcaaatgcaatgaaggacgcattggtcgattttgtgaatgcaacattgat
gaaatatatcgtgaggatatgcttgcctcctgtagaaaagataatgcatctctagtttgc
agtggtaatggagattgtatctgtggggaatgtgaatgcaaaaagagggaaaatcccaat
gaatacatctcaggcaaatattgcgaatgtgataacttcagttgtgaccgattcaatgga
ttgctctgtggaggaaatggcatttgccattgtggaaaatgcgagtgcctacctactttt
acaggcagtgcctgtcattgttcaatagatatggattcatgtaaatcaccgaatggacgg
atatgtaataacaaaggaatatgtgaatgtggtcagtgtagatgcacagaggggttcaca
ggaccaacatgtgagcactgtccaacttgttctggtgtctgtacggaccttaaggactgt
gtcctgtgtaaagcctttaaaaaaggacccaagaaagaaatctgtgatcagtgtgggttt
gaagtaactctcgtggatcgtccagatgagttgccacaatcgctttgccggtttatggac
ccagacatcggcaacttctgcttttcatatttttttaacaaccagaatgttccagaagtt
catgttgttaaaatcccagtttggtgctaa
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