Chiloscyllium plagiosum (whitespotted bambooshark): 122550430
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Entry
122550430 CDS
T08871
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122550430
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpla01009
]
122550430
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cpla04515
]
122550430
Protein phosphatases and associated proteins [BR:
cpla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122550430
Cell adhesion molecules [BR:
cpla04515
]
Cadherins
Protocadherins
122550430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
122550430
NCBI-ProteinID:
XP_043547094
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All DBs
Position
6:1797467..1805479
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AA seq
901 aa
AA seq
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MELSSRRTGTGCFLHIQEPPPLLLLLLLLVLPGTGRAAELLYRVREESPAGTYIGNLATD
LRLNRSEPGVTYNLASAAGSGRFVDLNRETGELRTSAAVLDREELCPDPGTGSLAEPCWL
LLDVLLLPPRLFRLLKLRLRVEDVNDQAPRFPASSLGLSVPENAEPGSRYPLEPAAEDPE
PGLNGMLRYRLQGTGPAAYSGAFSLAQEDGAVPGKPAPFLVLAAPLDRESRDRYVMELVA
EDRGSPSLSGTATVTVSVSDVNDHCPEFPQSELRLSVFSNISVGSTVTRLHAQDPDLGYN
ARVVYSYGERVPGSSSRLFRLDPVSGTIRLAAPIREGSARLHRLTVLATGTGCAPVALTV
SLNVIPVGVTGPPVLSPRYIALQADGVLYLKESEPPRTPLAFFTVTGDREPVRCYLHRGE
AAAAFRLSRYQDLPGEYLLETGQPLDYELQRRYQVTVVGENADGLASRVHLQIQLIDEND
NAPVFSSPSVQLLVEENNLPNCRLARLKATDADSGEMGNITYMLSPGVPPVFSVDPLSGT
LSVSTSLDREEHDRYRLTIRAIDGGTPSLESTATVIITVLDVNDNSPRFINKDFNFFVPE
DYPSFSEIGVIGVMDPDAGTNGWVALSILNGSEHFVIDTGKGNLMASVPLDREQQSSYIL
WIQATDGGEPALSAVAKVTVLLIDVNDNPPLVLFPQSNLSFLLVLPSTVPGSSITEVYAV
DKDTGMNAVIAYSIIGHRGPRPETFVIDAGTGNITLHEALVKNDYGLYRLLVKVSDHGYP
EPLHSTVIVNLFVNETLSNESYIENLLRKDPGIRIEESLPETRTDPFQTKLDVFPCETVL
IALSALCFGLFALAFALVCYISFRRKKHRRKAYGVAEVEIPLKKTLASFSLEKKSFNDLD
L
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggagctgagcagcaggaggacgggaacaggctgtttcctgcacatccaggagccgccg
ccgctgctgctgttgttgctgttgctggtcttaccgggcacgggccgggccgccgagctg
ctttaccgggtccgggaggagtcaccggcgggcacctacatcggtaacctggccaccgac
ctgaggctgaaccggagcgagccgggagtcacctataacctggcgtcggcggcgggctcc
ggccgcttcgtggacctgaaccgggagaccggggaactgcggacgtcggcggcggtgctg
gaccgggaggagctgtgcccggatcccggtaccgggagcctggcggaaccgtgctggctg
ctgctcgatgtcctgctgctgcccccccgcctgttccgcctcctcaagctccggctccgg
gtcgaggatgttaacgaccaggcgccgcggttccccgcctccagcctcggcctctcggta
ccggagaacgcggagccgggctcccgctaccctctggaaccggcggccgaggacccggag
cccggcctcaacgggatgctccgctaccggctgcaggggacgggccccgccgcctactcc
ggcgccttctctctggcccaggaggacggcgcggtgccggggaagccggctcctttcctg
gtcctggcggcgccgctggaccgggagtcccgggatcggtatgtgatggagctggtggcc
gaggaccggggcagcccgagcctgtcggggacggccacggtaacggtgtcggtgagcgac
gttaacgaccactgccccgagttcccgcagagcgagctccgcctcagcgtgttctccaac
atctcggtgggcagcaccgtcacccggctgcatgcccaggaccccgacctcggatacaac
gcccgggtcgtctactcgtacggggagcgggtccccgggagctccagccgcctgttccgc
ctggatccggtctccggtaccatccgcctggccgcccccatccgggagggcagtgcccgc
ttacaccggctcaccgtgctggctaccggcaccggctgcgccccggtcgccctcaccgtc
agcctgaacgttatcccggtgggggttaccggacccccggtgctcagcccccggtacatc
gccctgcaggcggacggcgtgctttacctgaaggagagtgagcccccccggacccccttg
gccttcttcaccgttaccggggaccgggagccggtccgctgctacctgcacagaggggag
gcagcggcggctttccgcctgtcccggtaccaggacctccccggtgagtacctcctggag
accgggcagcccctggactatgagctccagcggcgttaccaggtcacagtggtgggggag
aacgcagacgggctagccagcagggtccacctccaaatccaactcatcgacgagaacgac
aacgcgccggtgttcagcagcccctcagtacagctcttggtggaggagaacaacctcccg
aactgccgcctcgccagactgaaagccacagacgctgacagcggagagatgggtaacatc
acctacatgctcagccctggggtacctccggtcttcagtgtggacccactcagcgggacc
ctctctgtatccaccagcttagaccgagaggaacacgacaggtacagactcaccatcaga
gctatcgatggtgggacaccgtccctggaatctaccgccaccgtgatcatcaccgtcctg
gatgtcaatgacaacagccccaggttcatcaacaaagacttcaacttctttgtccctgaa
gactacccgagttttagtgagattggtgtgattggggttatggatcctgatgctgggacc
aatggctgggtcgccttgtctatccttaatggcagtgagcactttgtgatagacacaggc
aagggaaacctcatggcaagtgtgcctttggacagggaacagcagagctcctatattctt
tggattcaagctacagatggaggagaacctgctctttctgctgttgctaaagtgacagtg
cttctgatagatgtcaatgataacccaccattagtcttgttccctcagtctaacctctct
ttccttctcgtcctcccatccacggttcctggctcttccattactgaagtgtatgctgtt
gataaagacacaggaatgaatgctgtcattgcttacagcatcattggtcacagaggaccc
cgtccagagacttttgtcattgatgcaggcaccggcaacatcacgttgcatgaagctttg
gtgaagaatgattatggattgtatagactgctggtcaaagtcagtgatcatggatatcca
gagccacttcacagcactgttatagttaaccttttcgtcaatgaaacattgagcaacgag
agctacatagaaaatctactgaggaaagatcctggcatcaggatagaggagagtctacca
gagacaagaactgacccttttcaaacaaaactagatgtgtttccatgcgagactgtcttg
atagcattgtcagctttatgctttggactctttgccttagcttttgcattggtctgctac
atttcatttcgaagaaagaaacacagaagaaaagcttatggtgtggcagaggttgagatc
ccactaaagaagacattggcttcattttcattggagaaaaagtcatttaatgatttagat
ctatga
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