Chiloscyllium plagiosum (whitespotted bambooshark): 122550473
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Entry
122550473 CDS
T08871
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04382
Cornified envelope formation
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122550473
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122550473
09142 Cell motility
04820 Cytoskeleton in muscle cells
122550473
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122550473
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpla04147
]
122550473
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122550473
Exosome [BR:
cpla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122550473
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122550473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122550473
NCBI-ProteinID:
XP_043547174
LinkDB
All DBs
Position
6:13848055..14081800
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AA seq
1671 aa
AA seq
DB search
MSLCLSRWLLVASLLLIHTHNLEAAACHGCTSTSKCDCSGVKGEKGTIGLPGFVGPIGMP
GFPGVEGPAGPLGPKGDPGEPGLSGKKGIRGPAGSPGFPGTPGLPGLPGQDGPPGAAGIP
GCNGTKGDRGPLGPPGLPGLQGSPGTPGIPGPKGDPGEIIGISLTKGEPGFPGPPGKQGE
PGSPGLRGPSGPPGYPGPVGPPGIPGPPGPKGNMGVQFYGPKGQKGEPGVQGPSGPSGCE
ESQRGTTSKVILTKGEKGDRGYPGPKGFPGNPGRSSIGMKGDKGELGEPGKRGKPGKDGD
PGLPGRDGQQGDPGYPGLSGQDGPKGEKGNRGVDGPPGVIIDVDGSVIYGTRGDPGDPGP
PGIQGERGYPGPPGRPGVPGPPGPPLQGEKGLPGFTGERGHKGEKGDPGLSLSGLPGKDG
LRGPPGPRGPPGPPVTIENCRSFPGPPGPAGPQGLPGEAGLKGAKGDACFHCNLTASPGL
QGPPGPPGRPGEPGYPGAKGDRGLPGKEGFPGQPGIRGVPGPMGIPGPKGDPGDIQTLPG
VKGDRGDPGFPGAPGVPGPAGLPGKDGFQGPPGPKGEPGNIGFKGEKGLPGPPGLTGVPG
DQGTPGLPGVGEPGFPGEKGARGFPGHPGIPGSPGQKGESGNAVSKPGAPGLPGPQGLRG
EPGSRGDPGLPGSPGLQGATGPKGDPGLPGIGFPGPTGAKGSPGIQGQTGLPGLSGRPGN
DGIPGQPGPPGAKGQPGVGLPGPRGFPGVPGLDGVQGDKGDPGIPGIPGAPGNPGLPGLT
GDKGRTGPIGPLGPPGLPGPAGIGPPGQQGKPGPQGPPGLPGFQGLPGAKGDPGFPGLDI
PGPQGDRGNQGAKGLPGPPGFSGQIGPPGKDGPPGFQGPKGEMGVMGTPGSQGLPGSPGN
VGLPGLKGDRGLPGFPGPPGTGGEKGTKGEVGLVGKPGIIDKSEMEKMKGQKGDTGDPGR
SGFPGEKGYQGIPGDPGVPGKDGQPGLPGQPGPAGDPGRTGEPGFTGTPGEKGSIGEMGL
PGPVGPPGTPGEPGQTGMPGYTGRTGEKGEKGSAGLPGIGVPGDPGPKGDPGPTGFPGDP
GLKGESGFPGLPGTLGPTGQKGDPGGPGLPGNPGLPGKKGSPGLPGEPGFSGSPGVPGPP
GPQGLPGPQGEKGLRGLDGIPGTIGEKGNQGIPGRDIPGTPGLPGLKGSKGDSGLPGFPG
SPGVPGIKGDRGFPGLKGHQGIQGPPGPASVALEGPKGEKGNVGEQGLPGAPGIPGGPGS
PGFKGDKGDKGDTGAPGLQGFPGPKGEQGIQGSPGVAGYRGVPGQKGESGSHGVPGFIGI
KGLPGSPGFPGPQGDRGAPGQPGPPGPVGPQGPLQIVKGDAGFPGRPGEDGPKGYPGFPG
IKGDKGQTGLIGTPGEPGSPGFEGRPGLKGEIGPSGPAGPRGYPGPAGPEGAPGPRGYPG
PASIAHGFLVTRHSQTTEIPSCPQGTSKIYDGFSLLYVQGNERAHGQDLGTAGSCLRRFS
TMPFLFCNINNVCNFASRNDYSYWLATPEPMPMSMAPVVGQTIEPFISRCSVCEAPAMVI
AVHSQTIQIPLCPNGWTSLWIGYSFMMHTSSGAEGSGQALSSPGSCLESFRSAPFIECHG
RGTCNYYANSYSFWLATVESTEMFSKPESETLKAGELRTRISRCQVCMKKT
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgtctctctgcttgtcccgctggctgcttgtcgcgtccctgctcctgatccatacacac
aacctggaggcagcggcatgtcatggctgtacatcgacttccaagtgcgattgcagtggt
gtgaaaggagaaaagggaacaataggtttacctggctttgtgggacccataggaatgccg
ggattcccaggagttgaaggtcctgctggccctttgggaccaaagggggatcctggagaa
ccaggtctatcaggaaagaaaggaatccggggtccagctggttcaccagggttcccaggg
actccaggattgcctggtttaccaggacaagatggaccaccaggagcagcaggaatccca
ggatgtaacggcacaaagggtgatcgtgggccattgggacccccaggattaccaggtctc
caaggatctccgggtacaccaggtattccaggtccaaagggagacccaggagaaattatt
ggtatttcacttacaaagggggagccagggttccccggaccaccaggaaaacagggtgaa
ccgggcagtcctggattgcgaggaccaagtggtccaccaggttatcctggacctgtcggt
cccccaggaatcccaggccctccaggaccaaaggggaacatgggagtacagttttatgga
ccaaagggtcagaagggtgaaccaggagttcagggaccctcaggtccatctggttgtgaa
gagtcccaaagaggaacaacatcaaaagtcatcctcacaaagggtgagaaaggtgatcga
gggtatccaggtcctaagggttttcctggcaatcctggccgttcgagtattggaatgaag
ggggataaaggagagttgggagaaccagggaaacgcggtaaacccggaaaagacggtgat
ccaggtctcccaggacgtgatggtcagcaaggtgacccaggatatccaggtctctctgga
caggatggtcccaagggagagaaaggcaatcgtggagttgatggtcctccaggtgttatt
attgatgtcgatggaagtgttatttatgggactagaggggatcctggtgacccaggtccc
cctgggatacaaggcgaacgaggctatccaggcccgccaggacgtccgggagtacccggc
cctccaggtccccccctgcaaggtgagaaaggtctcccagggttcacaggtgaacgaggt
cacaaaggagagaagggtgatcccggattatcgctgtcaggtttaccaggaaaggatggt
ctaaggggtccccctgggccccgtggtcccccaggacctccagtgactattgagaattgt
cgaagtttcccaggaccgcccggacctgctggaccacaaggtttgcctggagaggctgga
ctgaaaggtgccaagggtgatgcctgtttccactgtaacctcaccgcgtcacctggacta
cagggacccccgggacctcccggaaggccaggtgagcccggatatccaggggccaaggga
gaccgtggtctaccaggaaaagagggattcccgggtcaacctggaattcgtggtgtccca
ggccccatgggtattcctggtccaaaaggcgatccaggtgatatccaaacattgcccgga
gtgaaaggggatcgtggtgaccctggcttcccaggggctccaggtgtgccgggtccggct
gggttacctgggaaagatggatttcaaggtcctccaggtcccaaaggcgagccaggaaac
atcggcttcaaaggtgagaagggcttgccaggaccccccggattaactggagtaccagga
gatcagggaactcctggactaccaggagtcggggagccaggctttccaggagaaaagggt
gcacgtggatttccaggacatccgggaatacccggaagcccaggtcagaaaggtgaatca
gggaatgctgtcagtaaaccaggagcccctggtctccctgggccacaagggttaaggggc
gagcctggaagcagaggtgaccctggccttccaggaagcccgggtttacaaggagctaca
gggccgaaaggtgatcccggtcttcccggcattggatttccaggcccaactggagcaaaa
ggctcaccagggattcaaggacaaacaggccttcctggtctttcaggacgtccagggaat
gatggcattccaggccagccaggacccccaggggcaaagggccaaccgggagtgggactg
ccgggcccccgaggatttccaggtgtcccaggactcgatggagttcaaggagataaaggt
gacccaggaatccctggaataccaggagcgccgggaaaccctggattacctggcctcaca
ggtgataaaggcagaaccggtccaataggaccactgggccctcctggacttccaggcccc
gcaggaattgggccaccaggtcagcaaggcaagccaggacctcagggaccaccaggcctc
ccaggattccagggattgccaggcgcgaagggtgatcctggctttccaggtctagatatc
ccaggtccacagggggacagggggaatcagggagcaaaaggtcttcctggacctccaggt
ttttcagggcaaattgggcccccaggaaaagatggccctccaggatttcaaggtcccaaa
ggagaaatgggggtcatgggtacacctggaagccaaggtttaccgggatctccagggaat
gtgggacttcctggtctgaaaggtgaccgtggcttgcctggtttcccgggtccccctgga
acaggtggtgagaaggggacaaaaggagaagttggtcttgtgggaaagcctggaatcata
gataaaagtgagatggagaaaatgaaagggcagaaaggagatacgggagatccaggtagg
tcaggctttccgggagaaaagggctatcaaggtatcccgggtgacccaggggtgccagga
aaagatggacaacctggattaccaggacaaccagggccagcgggagatccaggaagaacg
ggagaaccaggatttacgggcactccgggagagaaaggatcaattggagaaatgggcttg
ccaggtcctgttgggcctcctggtaccccgggtgaacctggacagacgggcatgcctggt
tatactgggcgtactggtgagaaaggtgagaagggcagcgcaggactaccaggaattgga
gttccaggtgatccagggccaaagggagatccaggtccaacaggcttcccaggtgatcct
ggcctgaagggtgagtctggttttccgggtttgccaggaacgctgggtccgacgggacag
aaaggcgatccaggtggtccaggacttccaggtaacccagggctcccaggaaagaaaggt
agccctggcctcccaggtgaaccaggtttctcaggaagtccaggagtgccaggtcctcct
ggtcctcaaggtctcccgggaccgcaaggagagaaaggcttaagaggtcttgatggaatc
ccaggaacaattggagaaaagggaaatcaaggcatcccaggaagagatatcccagggact
ccaggactgccaggactgaaaggatcaaaaggtgactctggcttaccaggattcccaggc
tcacctggtgttccaggtattaaaggcgaccgaggattcccaggccttaaaggccatcag
ggtattcaaggtccacctggacccgccagtgtggctctggaggggccaaaaggtgaaaaa
ggaaatgtgggtgagcaaggccttccaggagcaccaggaattcccggaggtcctggatct
ccaggattcaaaggagacaaaggagacaaaggagacacaggtgccccaggactccagggc
tttccaggacccaagggagaacagggaatccagggatctcctggtgttgctggttaccga
ggtgttccaggacagaagggtgaatcaggatctcatggagttccaggctttattggaatc
aaaggtcttccaggatctcccggatttccggggccacagggtgatagaggtgcgcctggg
caaccaggtccacctggtcctgtcggaccacaaggacccctgcagattgtgaagggagat
gctggatttcctggccgtccaggagaagacggaccgaagggataccctgggtttccaggc
attaaaggagacaagggtcagacaggtctaatcggtactcctggtgaaccagggtctcct
ggatttgagggaaggcctggactgaaaggagaaattggcccatctggtccagcaggtccg
aggggttatccaggacctgctggccctgaaggagctcctggccctcggggatatcctggc
cccgcgtcgatagctcatggcttccttgtgacccgacacagtcaaaccacagagattccc
agctgtccccaagggacatcgaaaatctacgatggcttctcgctgctctatgtccagggc
aatgaaagggctcatggtcaagacttgggcacagcaggcagttgcttacgaagattcagc
acgatgccatttcttttctgtaacatcaacaacgtctgcaatttcgcatcaagaaatgac
tattcctattggctggctacgccagaaccaatgccaatgagtatggctcctgtggttggt
cagacgattgagccatttatcagcagatgctctgtttgtgaagctccagcaatggtgatt
gctgtccacagccagacaattcaaatcccactctgccccaatggttggacatccctctgg
atcggctactccttcatgatgcacaccagttcgggagctgaggggtcaggacaggctttg
tcatcacctggttcatgcctggagtccttccgctcagctcccttcatcgagtgtcatggc
cgaggcacctgcaattactacgcaaactcttacagcttctggctcgcgactgttgagagc
acagagatgttcagcaaaccggaatcggagacactcaaggcgggagagctgcgcactcgc
attagccgctgccaagtctgcatgaagaagacgtaa
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