Chiloscyllium plagiosum (whitespotted bambooshark): 122550473
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Entry
122550473 CDS
T08871
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122550473
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122550473
09142 Cell motility
04820 Cytoskeleton in muscle cells
122550473
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpla04147
]
122550473
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122550473
Exosome [BR:
cpla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122550473
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122550473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122550473
NCBI-ProteinID:
XP_043547174
LinkDB
All DBs
Position
6:13848055..14081800
Genome browser
AA seq
1671 aa
AA seq
DB search
MSLCLSRWLLVASLLLIHTHNLEAAACHGCTSTSKCDCSGVKGEKGTIGLPGFVGPIGMP
GFPGVEGPAGPLGPKGDPGEPGLSGKKGIRGPAGSPGFPGTPGLPGLPGQDGPPGAAGIP
GCNGTKGDRGPLGPPGLPGLQGSPGTPGIPGPKGDPGEIIGISLTKGEPGFPGPPGKQGE
PGSPGLRGPSGPPGYPGPVGPPGIPGPPGPKGNMGVQFYGPKGQKGEPGVQGPSGPSGCE
ESQRGTTSKVILTKGEKGDRGYPGPKGFPGNPGRSSIGMKGDKGELGEPGKRGKPGKDGD
PGLPGRDGQQGDPGYPGLSGQDGPKGEKGNRGVDGPPGVIIDVDGSVIYGTRGDPGDPGP
PGIQGERGYPGPPGRPGVPGPPGPPLQGEKGLPGFTGERGHKGEKGDPGLSLSGLPGKDG
LRGPPGPRGPPGPPVTIENCRSFPGPPGPAGPQGLPGEAGLKGAKGDACFHCNLTASPGL
QGPPGPPGRPGEPGYPGAKGDRGLPGKEGFPGQPGIRGVPGPMGIPGPKGDPGDIQTLPG
VKGDRGDPGFPGAPGVPGPAGLPGKDGFQGPPGPKGEPGNIGFKGEKGLPGPPGLTGVPG
DQGTPGLPGVGEPGFPGEKGARGFPGHPGIPGSPGQKGESGNAVSKPGAPGLPGPQGLRG
EPGSRGDPGLPGSPGLQGATGPKGDPGLPGIGFPGPTGAKGSPGIQGQTGLPGLSGRPGN
DGIPGQPGPPGAKGQPGVGLPGPRGFPGVPGLDGVQGDKGDPGIPGIPGAPGNPGLPGLT
GDKGRTGPIGPLGPPGLPGPAGIGPPGQQGKPGPQGPPGLPGFQGLPGAKGDPGFPGLDI
PGPQGDRGNQGAKGLPGPPGFSGQIGPPGKDGPPGFQGPKGEMGVMGTPGSQGLPGSPGN
VGLPGLKGDRGLPGFPGPPGTGGEKGTKGEVGLVGKPGIIDKSEMEKMKGQKGDTGDPGR
SGFPGEKGYQGIPGDPGVPGKDGQPGLPGQPGPAGDPGRTGEPGFTGTPGEKGSIGEMGL
PGPVGPPGTPGEPGQTGMPGYTGRTGEKGEKGSAGLPGIGVPGDPGPKGDPGPTGFPGDP
GLKGESGFPGLPGTLGPTGQKGDPGGPGLPGNPGLPGKKGSPGLPGEPGFSGSPGVPGPP
GPQGLPGPQGEKGLRGLDGIPGTIGEKGNQGIPGRDIPGTPGLPGLKGSKGDSGLPGFPG
SPGVPGIKGDRGFPGLKGHQGIQGPPGPASVALEGPKGEKGNVGEQGLPGAPGIPGGPGS
PGFKGDKGDKGDTGAPGLQGFPGPKGEQGIQGSPGVAGYRGVPGQKGESGSHGVPGFIGI
KGLPGSPGFPGPQGDRGAPGQPGPPGPVGPQGPLQIVKGDAGFPGRPGEDGPKGYPGFPG
IKGDKGQTGLIGTPGEPGSPGFEGRPGLKGEIGPSGPAGPRGYPGPAGPEGAPGPRGYPG
PASIAHGFLVTRHSQTTEIPSCPQGTSKIYDGFSLLYVQGNERAHGQDLGTAGSCLRRFS
TMPFLFCNINNVCNFASRNDYSYWLATPEPMPMSMAPVVGQTIEPFISRCSVCEAPAMVI
AVHSQTIQIPLCPNGWTSLWIGYSFMMHTSSGAEGSGQALSSPGSCLESFRSAPFIECHG
RGTCNYYANSYSFWLATVESTEMFSKPESETLKAGELRTRISRCQVCMKKT
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgtctctctgcttgtcccgctggctgcttgtcgcgtccctgctcctgatccatacacac
aacctggaggcagcggcatgtcatggctgtacatcgacttccaagtgcgattgcagtggt
gtgaaaggagaaaagggaacaataggtttacctggctttgtgggacccataggaatgccg
ggattcccaggagttgaaggtcctgctggccctttgggaccaaagggggatcctggagaa
ccaggtctatcaggaaagaaaggaatccggggtccagctggttcaccagggttcccaggg
actccaggattgcctggtttaccaggacaagatggaccaccaggagcagcaggaatccca
ggatgtaacggcacaaagggtgatcgtgggccattgggacccccaggattaccaggtctc
caaggatctccgggtacaccaggtattccaggtccaaagggagacccaggagaaattatt
ggtatttcacttacaaagggggagccagggttccccggaccaccaggaaaacagggtgaa
ccgggcagtcctggattgcgaggaccaagtggtccaccaggttatcctggacctgtcggt
cccccaggaatcccaggccctccaggaccaaaggggaacatgggagtacagttttatgga
ccaaagggtcagaagggtgaaccaggagttcagggaccctcaggtccatctggttgtgaa
gagtcccaaagaggaacaacatcaaaagtcatcctcacaaagggtgagaaaggtgatcga
gggtatccaggtcctaagggttttcctggcaatcctggccgttcgagtattggaatgaag
ggggataaaggagagttgggagaaccagggaaacgcggtaaacccggaaaagacggtgat
ccaggtctcccaggacgtgatggtcagcaaggtgacccaggatatccaggtctctctgga
caggatggtcccaagggagagaaaggcaatcgtggagttgatggtcctccaggtgttatt
attgatgtcgatggaagtgttatttatgggactagaggggatcctggtgacccaggtccc
cctgggatacaaggcgaacgaggctatccaggcccgccaggacgtccgggagtacccggc
cctccaggtccccccctgcaaggtgagaaaggtctcccagggttcacaggtgaacgaggt
cacaaaggagagaagggtgatcccggattatcgctgtcaggtttaccaggaaaggatggt
ctaaggggtccccctgggccccgtggtcccccaggacctccagtgactattgagaattgt
cgaagtttcccaggaccgcccggacctgctggaccacaaggtttgcctggagaggctgga
ctgaaaggtgccaagggtgatgcctgtttccactgtaacctcaccgcgtcacctggacta
cagggacccccgggacctcccggaaggccaggtgagcccggatatccaggggccaaggga
gaccgtggtctaccaggaaaagagggattcccgggtcaacctggaattcgtggtgtccca
ggccccatgggtattcctggtccaaaaggcgatccaggtgatatccaaacattgcccgga
gtgaaaggggatcgtggtgaccctggcttcccaggggctccaggtgtgccgggtccggct
gggttacctgggaaagatggatttcaaggtcctccaggtcccaaaggcgagccaggaaac
atcggcttcaaaggtgagaagggcttgccaggaccccccggattaactggagtaccagga
gatcagggaactcctggactaccaggagtcggggagccaggctttccaggagaaaagggt
gcacgtggatttccaggacatccgggaatacccggaagcccaggtcagaaaggtgaatca
gggaatgctgtcagtaaaccaggagcccctggtctccctgggccacaagggttaaggggc
gagcctggaagcagaggtgaccctggccttccaggaagcccgggtttacaaggagctaca
gggccgaaaggtgatcccggtcttcccggcattggatttccaggcccaactggagcaaaa
ggctcaccagggattcaaggacaaacaggccttcctggtctttcaggacgtccagggaat
gatggcattccaggccagccaggacccccaggggcaaagggccaaccgggagtgggactg
ccgggcccccgaggatttccaggtgtcccaggactcgatggagttcaaggagataaaggt
gacccaggaatccctggaataccaggagcgccgggaaaccctggattacctggcctcaca
ggtgataaaggcagaaccggtccaataggaccactgggccctcctggacttccaggcccc
gcaggaattgggccaccaggtcagcaaggcaagccaggacctcagggaccaccaggcctc
ccaggattccagggattgccaggcgcgaagggtgatcctggctttccaggtctagatatc
ccaggtccacagggggacagggggaatcagggagcaaaaggtcttcctggacctccaggt
ttttcagggcaaattgggcccccaggaaaagatggccctccaggatttcaaggtcccaaa
ggagaaatgggggtcatgggtacacctggaagccaaggtttaccgggatctccagggaat
gtgggacttcctggtctgaaaggtgaccgtggcttgcctggtttcccgggtccccctgga
acaggtggtgagaaggggacaaaaggagaagttggtcttgtgggaaagcctggaatcata
gataaaagtgagatggagaaaatgaaagggcagaaaggagatacgggagatccaggtagg
tcaggctttccgggagaaaagggctatcaaggtatcccgggtgacccaggggtgccagga
aaagatggacaacctggattaccaggacaaccagggccagcgggagatccaggaagaacg
ggagaaccaggatttacgggcactccgggagagaaaggatcaattggagaaatgggcttg
ccaggtcctgttgggcctcctggtaccccgggtgaacctggacagacgggcatgcctggt
tatactgggcgtactggtgagaaaggtgagaagggcagcgcaggactaccaggaattgga
gttccaggtgatccagggccaaagggagatccaggtccaacaggcttcccaggtgatcct
ggcctgaagggtgagtctggttttccgggtttgccaggaacgctgggtccgacgggacag
aaaggcgatccaggtggtccaggacttccaggtaacccagggctcccaggaaagaaaggt
agccctggcctcccaggtgaaccaggtttctcaggaagtccaggagtgccaggtcctcct
ggtcctcaaggtctcccgggaccgcaaggagagaaaggcttaagaggtcttgatggaatc
ccaggaacaattggagaaaagggaaatcaaggcatcccaggaagagatatcccagggact
ccaggactgccaggactgaaaggatcaaaaggtgactctggcttaccaggattcccaggc
tcacctggtgttccaggtattaaaggcgaccgaggattcccaggccttaaaggccatcag
ggtattcaaggtccacctggacccgccagtgtggctctggaggggccaaaaggtgaaaaa
ggaaatgtgggtgagcaaggccttccaggagcaccaggaattcccggaggtcctggatct
ccaggattcaaaggagacaaaggagacaaaggagacacaggtgccccaggactccagggc
tttccaggacccaagggagaacagggaatccagggatctcctggtgttgctggttaccga
ggtgttccaggacagaagggtgaatcaggatctcatggagttccaggctttattggaatc
aaaggtcttccaggatctcccggatttccggggccacagggtgatagaggtgcgcctggg
caaccaggtccacctggtcctgtcggaccacaaggacccctgcagattgtgaagggagat
gctggatttcctggccgtccaggagaagacggaccgaagggataccctgggtttccaggc
attaaaggagacaagggtcagacaggtctaatcggtactcctggtgaaccagggtctcct
ggatttgagggaaggcctggactgaaaggagaaattggcccatctggtccagcaggtccg
aggggttatccaggacctgctggccctgaaggagctcctggccctcggggatatcctggc
cccgcgtcgatagctcatggcttccttgtgacccgacacagtcaaaccacagagattccc
agctgtccccaagggacatcgaaaatctacgatggcttctcgctgctctatgtccagggc
aatgaaagggctcatggtcaagacttgggcacagcaggcagttgcttacgaagattcagc
acgatgccatttcttttctgtaacatcaacaacgtctgcaatttcgcatcaagaaatgac
tattcctattggctggctacgccagaaccaatgccaatgagtatggctcctgtggttggt
cagacgattgagccatttatcagcagatgctctgtttgtgaagctccagcaatggtgatt
gctgtccacagccagacaattcaaatcccactctgccccaatggttggacatccctctgg
atcggctactccttcatgatgcacaccagttcgggagctgaggggtcaggacaggctttg
tcatcacctggttcatgcctggagtccttccgctcagctcccttcatcgagtgtcatggc
cgaggcacctgcaattactacgcaaactcttacagcttctggctcgcgactgttgagagc
acagagatgttcagcaaaccggaatcggagacactcaaggcgggagagctgcgcactcgc
attagccgctgccaagtctgcatgaagaagacgtaa
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