Chiloscyllium plagiosum (whitespotted bambooshark): 122550511
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Entry
122550511 CDS
T08871
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122550511
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpla01009
]
122550511
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cpla04515
]
122550511
Protein phosphatases and associated proteins [BR:
cpla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122550511
Cell adhesion molecules [BR:
cpla04515
]
Cadherins
Protocadherins
122550511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
Myb_DNA-bind_5
Baculo_11_kDa
MAP17
DUF7420
DUF6377
EphA2_TM
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
122550511
NCBI-ProteinID:
XP_043547277
LinkDB
All DBs
Position
6:complement(21356322..22057197)
Genome browser
AA seq
1526 aa
AA seq
DB search
MMELRDFYLLFALFACLTVDSALAQELVYTIQEELPENILIGSIPRDLNISAGGGADLIY
RLVSKAGEVPLLRVSSGTGDIYTGSQRVDREKLCPGGGGGGGGGEGEPGECSFEIEVVIL
PNDHFRLVKVKLVVRDVNDNAPMFPSPVINISIPENTLPNSRFPVPSASDPDAGANGVQR
YQLLDGQSVLGLDVVESPEGEKWPQLVVQRGLDREQKDTYVMKIKVEDGGVPAKSSTAIL
QVTVSDVNDNRPVFRESQLEVQLPEDSPPGTSVIQLHATDADVGSNAELRYLFSAQTPAA
VRRSFALDPSLGLITVQRPLDREDVSLHKMTVLATDGSSSPARATVTVNVTDVNDNPPAI
DIRYIISPVNGTVHLSEKDPVNTKIALITVSDRDTDVNGKVVCYIEKEVPFHLKAVYDNQ
YLLETSSFLDYEGTNQYAFRIVASDAGKPSLNQSALVRVRLEDENDNPPVFSQPVIELAV
PENNHRGLYLTTISATDDDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERY
IFTVTARDSGNPPLQSQAAVIVTVLDENDNNPKFTHNHFQFFVSENLPKYSTVGVITVTD
LDAGANAEVMASVVGDNANFILDPLSGVIRSNVSFDREQQSSYTFEVKAVDRGRPVRTSI
AKVTINVIDVNDNSPVVIYPPSNSSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYSIV
SGNNKGLFRIDPVTGNITLEEKPTAVDQGLHRLVVNISDLGYPKPLHTLVLVYLYVNDTV
NNASYVYELIRRTMETPLDKNIGDGTQPWQNEDYLTIMIAIVAGAMVVIVVIFVTILVRC
RQSSRFKATQRNKQGAEWMSPNQECKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDPAHE
PINGTITLPAELEEQTIGRFDWGSTPPTTFKPNSPDLARHYKSGSPQPSFHLKPDTPISA
KKHHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQYFVQNQ
DIPEIQPLLQYKKNSSNRCTSHRRVTFHLPDGSQESCSDSGLGDHEPVSGGTLISHPLPL
VQPQDEFYEQASPDKRTEADGNSDPNSMYTSSSSNNMSRISTGGKQTKMVSTVAKLQKVK
FSTLAMQMLVKHFTRLQRIFLATNPKMHTSEGHRRGWDVIVVKVNKISKVARTTEDCQKR
INDLRLGARQKVAFNKKRGTVQHRDVAKQKVLTWEEEKVAPIVHLVEHGPDASSDSSDSG
DCCTSKPLRSEQQQTTVIMEEEKMPSQHQEPRVAMEGAVTDKVQQGSYGEQKEDCTGGQW
KAAAYMKVPPSEKSEQRETYQPDATGAVNSSFPSHTQSAHGEELCPICRRLDTLVSTVQR
GFNHIHRDINTLQNASQYRGARLSQNVMSLIGAMHTLVRLHHFSTLPRRDVAIQTSMLTG
RHLGENVGAASSDTTTVSSDNVTTLNNTPPTSSDTVVASNETGAASSDTGVTSNDTVIEV
SVDPDGDSAESMSIEESSQNSSDSDW
NT seq
4581 nt
NT seq
+upstream
nt +downstream
nt
atgatggagctgcgggatttctacctgctgttcgccctgttcgcctgcctgacggtggac
tctgccttggctcaggagctggtctataccatccaggaggagctgccggagaacatcctg
atcggcagcatcccgcgggacctgaacatctcggccggtggaggagcggacctcatctac
cgcctggtgtccaaggcgggcgaggtgcccctgctgcgggtctccagcggcaccggggac
atctacacgggctcgcagcgggtggaccgggagaagctgtgcccgggaggaggaggagga
ggaggaggcggcgagggtgagccgggcgagtgctccttcgagatcgaggtggtgatcctg
cccaacgaccacttcaggctggtcaaggtgaagctggtggtgcgcgacgtgaacgacaac
gcgcccatgttcccctcgccggtgatcaacatctccatcccggagaacacgctgcccaac
agccgcttcccggtgccgtccgccagcgacccggacgccggcgccaacggggtgcagcgc
taccagctgctcgacgggcagagcgtcctcggcctggacgtggtggagagccccgagggc
gagaagtggccgcagctggtggtgcagcggggcttggaccgggagcagaaggacacctac
gtgatgaagatcaaagtggaggacggcggggtgcccgccaagtccagcaccgccatcctg
caggtgaccgtcagcgatgtcaatgacaaccgcccggtgttccgggagagccagctggag
gtgcagttgcccgaggactcgccgccgggcacctcggtcatccagctgcacgccaccgac
gcggacgtgggctccaacgccgagctccggtacctgttcagcgcgcaaaccccggcggcg
gtgcggcgctccttcgcgctggacccgagcctggggctcatcaccgtgcagcgcccgctc
gaccgggaggacgtctcgctgcacaagatgaccgtgctggccaccgacggcagctccagc
cccgcccgcgccaccgtcaccgtcaatgtcaccgatgtgaacgacaacccgcccgccatc
gacatccgctacatcatcagcccggtgaacggcaccgtgcacctctctgagaaggacccg
gtcaacaccaagatcgccctcatcaccgtctccgacagggacaccgacgtcaacggcaag
gtggtctgctacatcgagaaggaggtccccttccacctcaaggcagtctacgacaaccag
tacctgctggagacctcctccttcctggactacgagggcaccaaccagtacgccttcagg
atcgtggcgtcggacgcgggcaagcccagcctgaaccagagcgccctggtccgggtgagg
ctggaggacgagaacgacaacccgccggtcttcagccagcccgtcatcgagctggcggtg
cccgagaacaaccaccgcggcctctacctgaccaccatcagcgccacagacgacgacagc
ggcaagaacgccgagatcgtctaccagctggggcccaacgcctccttcttcgacctggac
cgcaagacgggcgtcctgaccgcctcacgggtcttcgaccgggaggagcaggagcgttac
attttcacggtgaccgccagggacagcggcaaccccccgctgcagagccaagctgccgtg
atcgtcacggtgctggacgagaacgacaataaccccaagttcacccataaccacttccag
ttctttgtgtctgagaacttaccaaagtacagcactgtgggagtgattactgtcaccgac
ctggatgcaggggccaacgcagaggtgatggcttctgtcgtcggagacaatgcgaatttc
attctagacccactgagtggtgtgataaggtctaacgtctcttttgacagagaacagcaa
agctcctacacttttgaagttaaagctgtagacagggggagaccagtccgcacttccatt
gctaaagttacaatcaatgtcatcgatgtcaatgataacagtcccgttgtaatctatcca
ccttccaactcttcattcaaactagtacccctgtctgctatacctggttccgtggtggca
gaagtgtttgctgtggatgttgatacaggtatgaatgctgagctgaaatacagcattgtt
agcggaaataacaaaggtttgtttcgaattgaccctgtgactggtaatatcaccttggag
gagaaaccaactgctgtcgaccagggcttgcaccgcctggttgtgaacatcagcgatcta
ggttatccgaaacccttgcacacccttgtgcttgtctacttgtatgtaaatgacactgta
aacaatgctagttacgtctatgagttaatacggaggacaatggagactccactggataag
aacattggagatggcacccagccgtggcaaaatgaggattaccttaccataatgatcgcc
atagtggcgggagccatggtggtgattgtggtcatctttgttacaatattggtgcggtgc
aggcagtcctcaaggttcaaggctacacaaaggaacaaacagggtgctgaatggatgtct
cctaatcaggagtgtaagcagaacaaaaagaagaaaaggaagaaaagaaaatctccgaag
agttctcttctaaactttgttaccatcgaggaatccaaacctgatgatcctgcccatgag
cccatcaatggaaccattacccttccagctgagctggaagagcagacgataggacgattt
gactggggcagcacaccaccaactacatttaagcccaacagcccagacctagcaaggcat
tacaaatctggctctccgcagccctcttttcatctgaagccagacacccctatttctgcg
aaaaagcatcacgtgattcaggagctccctttggacaacaccttcgttgggggttgtgac
accctgtcgaagcgctcttccactagttcagaccacttcagtgcctcagagtgtagctcc
caaggaggcttcaagacaaagggcccattgcacaccagacagtactttgtgcaaaatcag
gatatccccgaaatacagccactactgcaatataagaagaacagcagcaatcgatgcaca
tctcaccgccgcgttacatttcatctgcccgacggctcccaggaaagctgcagtgatagt
ggtttaggagaccatgaaccagtaagtggtggcacgctgatctcacaccctctccctctg
gttcagccgcaggacgagttctacgagcaggcttccccagacaagaggaccgaggccgac
ggcaactctgacccaaattctatgtacacgtcttcatcatctaataacatgtccagaatc
tctacaggcggaaagcagacgaaaatggtgtccacagtagctaaactgcagaaggttaaa
ttctccacgttggctatgcaaatgcttgtgaaacatttcacaaggttacaaagaatattc
ctggccacgaatcccaaaatgcacactagtgagggtcaccgacgtggctgggacgtcatt
gttgtaaaagtcaacaaaatttccaaagtagcacgaacaaccgaggactgtcaaaagcgc
atcaatgacttaagacttggtgctcgacaaaaagtcgcttttaacaaaaagagagggaca
gtccagcacagagatgtggcaaaacagaaagtcctaacatgggaggaagaaaaagtggcc
ccgatagtccaccttgtggaacatggacctgatgcgtcctctgactcaagtgattctggt
gattgttgcacctcaaaacccttgagatcagagcaacaacaaaccactgtgatcatggag
gaggagaagatgccatcccagcatcaggagcctagagtagccatggaaggtgcagtgact
gacaaggtacaacaaggttcatatggggaacagaaagaagactgtacaggtgggcaatgg
aaagcagcagcttacatgaaagtgccaccctcagagaaatcagagcaaagagagacatat
cagccagatgcaacaggtgctgtgaattcctcttttccatcacacactcaaagtgcacat
ggtgaggagctttgtcccatatgtcgtaggttagatacacttgtgagcactgtgcaacgt
gggttcaaccacatacatagggacataaacacattacaaaatgcctctcagtaccgtgga
gcccgtttgtcccagaatgtcatgtctctgattggtgcaatgcacactcttgtgagactc
catcatttttccacattgccacgcagagatgtggctattcagacctccatgctgactgga
aggcatctgggggaaaatgttggagctgcatctagtgacacaacaactgtatcaagtgat
aatgtcactaccctcaataacaccccacctacatccagtgacactgtagtggcatccaat
gaaactggagctgcatccagtgacactggggttacgtcaaatgacacagtgatcgaagtg
tcagttgatcctgatggggactctgcagagagtatgtccattgaggagtcctctcaaaat
tcttcagacagtgattggtaa
DBGET
integrated database retrieval system
