Chiloscyllium plagiosum (whitespotted bambooshark): 122550529
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Entry
122550529 CDS
T08871
Symbol
lmo7a
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
122550529 (lmo7a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpla04121
]
122550529 (lmo7a)
Ubiquitin system [BR:
cpla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122550529 (lmo7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
PDZ
LIM
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
122550529
NCBI-ProteinID:
XP_043547332
LinkDB
All DBs
Position
6:27576035..27801035
Genome browser
AA seq
1442 aa
AA seq
DB search
MCSSVLPSEISCCSTRPCKLFSASAVTAPHPRSWGAAQLPDFSPASLLSLVCYRAMEWKQ
QADPDHVLAFRDAQRWVEEVTGKSFGNKDFRAALEDGALLCELVNKIKPGVSKKINRLST
PIAGLDNINVFLKGCQKLGLKEAQLFHPGDLQDLSSRVTVKREENQRRLKNVLITIYWLG
RRAQHEPHYNGPYLNLKAFEGLLGQTLTKALVDSDSLKRSGRDSGYCDIWCTERNESISP
QLRHRRDDSLDSLDSFGSKSVTSLSSDITLKGSSEGGGSDVESDYLNSKTMDEVKNDMSL
RRTSTSDYKPVVPYNQYLPKKSKPATYIPAPLMKKRAERHEENRRSWANPMFEKNDGTFS
RSKSLNDVSEDSTGIPKSLRYEELQRIKATLNDQDQQWQSDLAKWKNRRKSYTSDLQRKK
DEREEIEKITSGENAKPTKTFRQIRKERELRQEGSYAGDQSDYRKLNSSDEEVFAEETKP
PRRFYERSSTVASETPFTSQRHEVVSSAPPPPQVSKSTTASELKSTVNSLSGKQNSAALY
TRHTMDPKTEQTKVSNSLPRNYQAPDVSRIAPVIVPRPYGTQSKRVSSLSRSYQLQDESL
KYNGDVNGSKMSQGTPSFFSKPEVQESKNSRGGLPKQEEGTTWVNRSLKMEEKRSVLVNL
SSKPENDVHAKSNCLSKQDDDDQSQASPVMSSNEDEAEEEEEEEEEEEEERPASLSKSNF
PQESKPDTTTGPVTMNSFTKTSSLATAPVTTAATQQGQYSNTRIVINQRPNSGRDFGFTT
IPSSTGITVESVERGGPAEFCQLQEGDEIISISGNDVAGMSHQTWQEAMEDANKSGNLNL
EIRRYEKSYIRDSEHTNFNDPTRWEDAGLASVTNRTQFLNQSMEVDKSKRDQENLLEDAK
PKASEPLSLRNFKRRSQFFEQGGSESAVSDLQIPSISVSSRWSWNPEEERKRQEVWQKEQ
DRLLQEKYQREQEKLQEEWRKAQKEAEQEGSKYYEEERRILQETNTPQSPSNTVDGPVEF
KNQFTSRNWMTSWNNQESEDESQELGEEEDWHGSEDDEAGQREDFQLQEERRRQEEEEAD
RLEQERKLQEKERERQEQWHREKERLEEKRQRQCQQAEERARLAESERTEEYQPQWAKSK
STSDLDEFVPAHRHGVGVKPVGGVAQWLLEEEKLRRRHGKTQEAARVELETERLKILNQM
KYADPERGDVKHKVPDNSWIKNEMKPKSSQQQDPPLSYAEQERQKILQEMRRKTQLLNDN
SWIRQRSASIANKTASSNYGLMRRGESLDNLDAPKTNNWGTNAEPTHSSGKGPGYYPIST
SNRSYMRTASSTLPPQSTGSLRTASWTKNPSVAPTSQSQILQSNRSISGKKICSYCDNPL
GRGAAMIIESLGLCYHLQCFKCILCSIDLGGTESGAEVRVRNNKLYCNACYIQYKAGQSV
PI
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagctccgtacttccgagtgaaattagctgttgctccactcgaccatgtaaactg
ttcagtgcaagtgcagtcacagcgccgcacccgagatcctggggagctgcacaattacct
gacttctccccagcttcacttctttcacttgtctgctaccgagcgatggagtggaaacag
caggcggatcctgaccacgtcttggcattcagagacgctcagcgatgggtagaggaggtt
actgggaagagctttggcaacaaagattttcgggcagcactggaagatggagccttgtta
tgcgaactagttaacaagataaaaccaggtgtcagtaaaaagatcaaccgcctgtccaca
ccgatagctggtctggacaacattaatgttttcttgaaaggctgtcaaaaacttggttta
aaagaagcccagctgtttcacccaggagatctacaggatttatccagtcgcgtcactgtc
aaacgtgaagaaaatcagaggaggctaaaaaatgttctgatcacaatatattggctgggt
agaagagcacagcatgagcctcattataatggaccttaccttaacctgaaagcatttgaa
gggctgcttggacaaactctgacaaaggctcttgtggactctgacagtctgaaacgcagt
ggacgagacagtggatactgtgatatctggtgtacggaaaggaacgagtcaatatcacca
cagctcaggcatagaagagacgattcacttgatagtttagactcatttgggtcaaagtct
gtcaccagcctttcatcagacataacactaaaaggcagtagtgagggtggtgggagtgac
gttgagtcagattatctaaacagcaagacaatggatgaagtgaagaacgatatgtcactt
cgcaggacctccacttcagactataagcctgtagtgccatacaaccaatacctgccaaag
aaaagcaaacctgcaacttacattccagctccactgatgaaaaagcgagcggaaagacat
gaagaaaatagaagaagttgggcaaacccaatgtttgaaaaaaatgatggaacattttca
aggagtaaatcactcaatgacgtgtctgaagattccactggaattcctaaatcactgcga
tatgaagagttacagagaataaaggctactctaaatgaccaagaccagcagtggcagagt
gacttggcaaaatggaaaaaccgacgcaaaagttatacttcggacttgcagaggaagaag
gacgaaagagaagaaattgagaaaataacaagtggagagaatgctaaacccacaaagaca
ttcagacaaattaggaaagaaagggagctcagacaggagggatcatacgccggtgaccaa
agtgattacagaaagctcaattcctctgacgaagaagtgtttgctgaagaaaccaaaccc
ccaagacgtttttacgagagaagctccacagtggcgagtgaaacccctttcacttcccag
aggcatgaggtggtttcctcagcacctccaccacctcaagtctcaaagagcacgacagcg
tctgaattgaaaagcacagtcaacagtctgtcaggaaagcaaaactctgctgctttgtat
acccgccatacaatggatcccaaaactgaacaaaccaaggtttcaaattctttgcccagg
aattaccaagcacctgatgtatccaggattgcacctgtcatcgtgccaagaccctatggt
acacaatctaaaagagtctcctccctctctcgatcttatcagttgcaagatgagtcgctt
aaatacaacggagatgtgaatggttcaaaaatgtcccagggcacaccaagtttcttttcc
aagccagaagtgcaagaatccaagaacagtcgtgggggcttgccaaagcaagaagaggga
acaacgtgggtcaaccgttccttgaaaatggaggaaaagagatcagtgctggtcaatctt
tcttcaaaaccagaaaatgatgttcatgcaaagagcaactgtttatcaaaacaagatgat
gatgaccaatcacaggccagtcctgtaatgagtagtaatgaggacgaggcagaggaggag
gaggaggaagaggaggaggaggaagaagaaaggccagcatctcttagtaagagtaacttt
cctcaagagtcaaagcctgacactactactggcccagtaacaatgaattcttttacaaaa
acaagcagcttggccacagccccggttaccacagcagccacgcaacagggacagtacagt
aacacgcgaatagttattaatcagaggccgaacagtggtcgcgactttggatttacaacc
attccgagctctacgggaataactgtcgagtcagttgaacgaggaggaccagcagaattt
tgccaactgcaagagggcgatgaaatcatttctatcagtggtaatgatgtagctggtatg
agccaccagacttggcaggaagccatggaggatgcaaacaagagtggaaatctgaacctg
gaaatcagaagatatgagaaaagttatatacgtgattcagaacatactaacttcaatgac
cctaccagatgggaagatgctggactggcctctgtgaccaataggacccaattcttgaat
caatcaatggaggttgataaatctaaaagggaccaggaaaatttgctggaggatgcaaag
ccaaaagcatctgagccccttagcctgagaaactttaaaagacgatcccaattttttgaa
caaggcggatccgagtctgcagtgagtgatctacaaattccatcaattagtgtttcaagt
cgatggtcttggaatcctgaggaagagagaaagcgccaggaagtatggcagaaagagcag
gaccgtttgttacaggaaaaataccagcgtgagcaggagaaactacaggaagagtggaga
aaggctcagaaagaagctgaacaagaaggttccaagtactatgaagaggagcgcaggata
ttgcaggaaacaaacactccacaatcgccttcaaatactgtggatgggcctgtagagttc
aagaaccagttcacttctcgaaactggatgacatcttggaataaccaagagtcggaggat
gaatcgcaggaactgggagaggaagaagattggcacggaagtgaagatgatgaggcaggg
cagcgagaggacttccagttgcaagaagaaagaaggcgtcaagaagaagaagaagcagat
cgccttgaacaggagagaaagctgcaagagaaagaacgtgaacgacaagaacaatggcat
cgtgagaaagagcgacttgaagagaagaggcagagacaatgccaacaagccgaagaaagg
gcacggttagcagaaagtgaaagaacagaggaatatcagccccagtgggccaagtccaag
tcgacctctgacctcgatgagtttgtgcctgcccatagacacggtgtaggtgtgaaacca
gtgggtggtgtggcccagtggctgcttgaggaagaaaagctacgcaggcgacatgggaag
acgcaggaagctgcacgtgttgaattggaaacagagaggctgaaaatccttaatcagatg
aaatatgctgacccagagagaggtgacgtaaagcacaaagtcccagacaactcatggatt
aagaatgaaatgaaaccaaaatcttcacagcagcaagatccaccactctcgtatgctgag
caagagcgacagaaaatcctacaggagatgcgcagaaagacccagctcctgaatgataat
agctggatcagacagcgtagtgccagtattgccaataagactgcatctagcaattatgga
ttaatgagaaggggtgaatctttagacaacttagatgctccaaagacaaacaactgggga
acaaatgcagagccaacacattcctcgggaaagggacctggttattatccaatctccacc
tcaaaccgctcttatatgcgcactgcatcatcaaccttaccgcctcaatccactggatca
ttgagaacagcatcatggaccaagaatccttctgttgcgccaaccagtcagtcccagata
ctacaaagcaataggtcaataagtggaaagaagatctgttcatactgtgataaccccctg
ggcagaggagctgccatgatcatcgaatctcttggtctttgttatcacttacaatgtttt
aagtgcatcttgtgcagcattgaccttggaggtacagaatctggagcagaggtcagagta
cggaataacaaactctattgtaacgcctgctacatccagtacaaagctggacagtccgtg
cctatttga
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