Chiloscyllium plagiosum (whitespotted bambooshark): 122550685
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Entry
122550685 CDS
T08871
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03013
Nucleocytoplasmic transport
cpla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122550685 (upf3a)
03015 mRNA surveillance pathway
122550685 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122550685 (upf3a)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122550685 (upf3a)
mRNA cycle factors
P-body specific factors
122550685 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
Motif
Other DBs
NCBI-GeneID:
122550685
NCBI-ProteinID:
XP_043547724
LinkDB
All DBs
Position
6:complement(70330558..70398991)
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AA seq
533 aa
AA seq
DB search
MKEEKENKGRERRVDIQFRDREEGEKRKEKDEKKEVLTKVVIRRLPPTLTKAQLEELLHP
LPTHDYFEFCAADTSLYPHLFSRAYINFKNPDDIILFRDRFDGYIFIDNKGQEYPAVVEF
APFQKISKRKLKKKDAKSGSIEEDPEYKKFLESYCADEEKIAANPETLLGEIEAKTRELI
VGTDQFLTLENVYSQELKGVSRTWKQLRVYKNTARRTTPLLEYIKNKKLEKQRIREEKRE
ERRRRELEKKRLREEEKRKRREEERRKRKEAEKQKKIAEKERKEEIKIKLLKKADKEEEQ
DSDKRKEKTEDGDNGKGKWEKLCCPGNLQGKRPEISQKDVKDKQPNDSDRERRERERERR
LREKERERERQRRREDERRKQKERYEVERAMKTKEEETKRGKDHGQEREKKGDSLSYMFS
TEKIEKLSKEDKNDDMGSKRERIRNKSSQVNEVDFDNSSELRGEDQYKQIQNHQIKQDRP
AMQLYQPGARCRTRLGSGGKAFDYCSKSSEDSAERKYEDDSSIGAGSEKSCEE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagagaaagagaacaaggggcgtgagcggcgagtggacatccagttcagagac
agagaggaaggggaaaaacgcaaagagaaagatgagaaaaaggaggtgctcactaaggtg
gtgattaggcgtttacctcctactttgactaaagcacagctagaggaactactgcatcca
ctaccaacacatgattattttgaattttgtgctgctgatacaagcctgtacccccacttg
ttctctagagcctacatcaattttaaaaatcctgatgatataattctcttcagagaccga
tttgatggatatatcttcattgataataaaggtcaggaatacccagctgtggttgaattt
gctccatttcagaaaatttctaaaaggaagctgaaaaagaaagatgcgaaatctgggagc
attgaggaagatcctgagtacaagaagtttttagaaagttactgtgcagatgaggagaaa
attgcagccaacccagagacgcttctgggagagatcgaggcaaagaccagagaactgatt
gtgggtacagaccaattcctaacactggagaatgtctatagccaggaacttaaaggtgta
agcagaacttggaagcagctgcgtgtctacaagaacacagccaggagaaccacaccactt
ctggagtatattaaaaacaagaagcttgaaaaacagcgaatcagagaggagaaaagagaa
gagaggaggaggagggagctggagaaaaaacgtttaagagaggaagaaaaaagaaaacgt
agagaggaagaaaggcgtaaaaggaaagaagcagaaaaacagaaaaaaatagcagagaag
gaaagaaaagaagaaataaaaattaagttattaaaaaaggctgataaagaggaggaacaa
gactcggacaaaaggaaggagaaaacggaggatggtgacaatggaaaaggaaaatgggaa
aaattgtgttgcccaggaaacctgcaaggaaaacggccagagatttcgcagaaagatgtc
aaagataaacagccaaatgatagtgatagagaacgtagggagagggaacgggaaagaaga
ttaagggaaaaagaacgagaacgagagcgacagaggcgtcgtgaggatgagcgcagaaag
caaaaagagcgttatgaagtagagagggctatgaaaacaaaagaagaagaaacaaaaaga
gggaaagaccatggacaggaaagagaaaagaagggagacagcctcagctacatgttcagt
actgagaaaatagaaaaactgagtaaagaagacaaaaatgatgacatgggatctaaaagg
gaacgaataaggaataagtcatcacaggtcaatgaagtggactttgataactcatcggaa
ttgaggggtgaggatcaatacaagcagatacagaatcaccagattaagcaggaccgtcca
gctatgcagttgtatcaacctggagcacgctgccgaactcgtctaggatctggtggaaaa
gcatttgactattgcagtaaatcctctgaagacagcgctgagagaaaatatgaagatgat
agctctattggagctggttctgagaagagttgcgaagaatga
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