Chiloscyllium plagiosum (whitespotted bambooshark): 122550799
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Entry
122550799 CDS
T08871
Symbol
rfc3
Name
(RefSeq) replication factor C subunit 3 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03030
DNA replication
cpla03410
Base excision repair
cpla03420
Nucleotide excision repair
cpla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122550799 (rfc3)
03410 Base excision repair
122550799 (rfc3)
03420 Nucleotide excision repair
122550799 (rfc3)
03430 Mismatch repair
122550799 (rfc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpla03032
]
122550799 (rfc3)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122550799 (rfc3)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122550799 (rfc3)
DNA replication proteins [BR:
cpla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122550799 (rfc3)
DNA Replication Termination Factors
ELG1-RFC complex
122550799 (rfc3)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
122550799 (rfc3)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122550799 (rfc3)
Check point factors
HRAD17(Rad24)-RFC complex
122550799 (rfc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA
AAA_16
AAA_22
AAA_11
ATPgrasp_ST
DUF2247
CHB_HEX
ABC_tran
AAA_2
T4SS-DNA_transf
AAA_5
Motif
Other DBs
NCBI-GeneID:
122550799
NCBI-ProteinID:
XP_043548003
LinkDB
All DBs
Position
6:88024206..88107319
Genome browser
AA seq
356 aa
AA seq
DB search
MSLWVDKYRPTALSKLDYHKEQASQLRNLVQCGDFPHLLVYGPSGSGKKTRIMCLLRELY
GAGIEKLRIEHQTITTPSKKKLEISTIASNYHLEVNASDAGTSDRVVIQELIKTIAQSQQ
LETSTQRDFKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCL
AVRVSAPSIEEICHVLSGVCKKEGLVLPQDLGKKIAEKSNRNLRKALLMCEACRVQQYPF
IADQDIPETDWEIYLQETANVIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLTELL
NNCDGLLKGEVAQMAAFYEHRLQLGNKAIYHLEAFVAKFMAIYKQFMEDGLEAMMF
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgtgggtggacaaataccggccaacggctctcagcaaactggactaccataag
gagcaggccagtcagctccgtaacctggttcaatgtggtgatttccctcacttgctggta
tatggaccttcaggctcagggaagaagactaggataatgtgtttacttcgggagctttat
ggtgcaggaatagagaagctaaggattgagcaccaaacaattacaacaccatccaaaaag
aagctggaaataagcacaatagcaagcaactatcatcttgaagttaatgcaagtgatgct
gggaccagtgaccgtgtagttattcaagaactgattaaaacaatagcacaatctcaacag
cttgagacaagtactcaaagagacttcaaagttgtattgctgacagaagttgatagatta
acaaaagatgcccagcatgccttgaggaggacaatggaaaagtacatgtcgacctgcaga
ttaattctttgttgtaactcaacatcgaaagtcattgcacctattcgtagccgatgtctt
gcagtgcgagtctctgcgcccagcattgaggaaatttgtcatgtgttgagtggagtttgc
aagaaggaaggtcttgttcttcctcaagacctggggaagaaaattgcagaaaaatccaat
cgcaacctgaggaaagcattgcttatgtgcgaagcctgcagggttcaacaatatccattt
atagcagatcaggatattcctgagacagattgggaaatatatctccaagaaactgctaat
gttattgtcagccagcaaacaccacaaagactacttgaagtgcgtggacgattgtacgag
ctcctgacccactgcataccacctgaaataataatgaagggtctcttgacagagttatta
aacaattgtgacggtctgcttaagggggaggttgcacagatggctgcattttatgaacat
cgtctacagcttggcaacaaggccatctatcacctggaagcatttgtggccaagtttatg
gctatttacaagcaatttatggaagatggacttgaagctatgatgttctaa
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