Chiloscyllium plagiosum (whitespotted bambooshark): 122550982
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Entry
122550982 CDS
T08871
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122550982 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122550982 (nup98)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122550982 (nup98)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122550982 (nup98)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
122550982 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Mpv17_PMP22
Motif
Other DBs
NCBI-GeneID:
122550982
NCBI-ProteinID:
XP_043548498
LinkDB
All DBs
Position
6:117546101..117628824
Genome browser
AA seq
1832 aa
AA seq
DB search
MFNKSQFGTPTFGNTSGFTTSAFGQNTATPGFGGFGAATAGFGTATNTGGGLFGNTQNKP
GGLFGSSSFGQPATSSTNAGFGFGTSTSNSLFGGTSTGGLFSNQQSNAFTQSKPAGGFGS
FGASTTGGGLFGTTSTASNPFGGTSGTLFGGTTFSTAAPTGTTVKFNPPTGTDTMVKSGV
STNISTKHQCITAMKEYETKSLEELRLEDYTAGRKGPQAPLGGGGGLFGTSTATSSAGTG
LFGATPANPTGGFNFGQNKTGFGANTGLLSQVGVLGTVCGSSLQKTGTGAFGTATGGLFG
QPQQQASTGLFGSKPFGLATTTQSTGFGFGTTNTLGQPNTSSMSLFGTAPVSQSGGIFGT
STNTSTGNAFGAGGGLFGNTNAAFTNVNNTLFANKPAGFGTATTSASAFGTAGAGLFGNK
PNLTIGANANTSNFGFGATAATGGLFGNKPATGALGTTLGGGFGSALGAGQTSLFGSTQP
KLGTTLGAGTFGTGAFNAPNAGVGFGTPQAPVCLTDPNASATQQAVLQQQLNALAYTPFG
DSPLFRNPMVDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALQATGSSKSQ
LFDGLDDDEPTSLSNGTFLPRKSIKKLVLKSMNNSTLCSPVLCKEPNDLASPSDYPENGE
NEQECRLEREDNDQQEVNKCYTNTIVKPIPQTPEGVNSNRHQNSAMDDTITEMNLRNKLR
NGILEGSSEDPCYIDGSLSVERESEIDDSLPPHPAGIVLTRVGYYTIPSMDELAQQLNEN
GECIVENFTIGRKGYGSIYFPGVVNLTNMNLDEIVHVRRKEVIVYLDDEKKPPVGEGLNR
RAEVTLDGVWPTDKTTRCLIKSPERLMEMGFEERLESSSRKQGARFLEYRSETGSWVFEV
THFSKYGLQDSDEEDSEQTSKAETKKMKTAALPDQQAAQICKPVKNLQLESPLMQQLGRV
TEFDSDMADITQEPMPDSLLDEDISEDQELVSASSNIASSLGINPHSLQVMKASLLSEDE
DVDKMQNQHFAHLTADDHCQRMLPRQILLKQGERSKGLGGGMFYCSFPKKFLPFTVHQEQ
RQQHSPTAVEILRSPPLHPWPVAGQLPSTFSVPSQLPELQLKTVGIRQHQRLVPMEQSVT
NGKGKLLMDMALFAGRSFRVGWAPNCTLCHSGQLLSHVTEYDTDPCSVEYNFFPKPAKIK
HVSELPFKVHVEKVMLKEERARQDLSLYTEQLEIALRYSHVGTEGSCPFVEPQQGVDALH
EYAAWIQEAEDKSEYTEGIVRGWSLAWTLCEALWGNLKELEAAFSEPSPYIQQLERRKAF
SHWLSRTAEERIEEEVAVSHHMSHVDAVFSYLTGKRISEACKLAQQSGDHRLALLLAQAA
GGQQVRELLNLQLADWNQMKADPFIQEERLKIFALLAGQAVWVSSEGYINVCSQLDWKRC
LAVHLWYMLPPRSSIADALNVYSEAFQGSEAVQKYAQYPLPPYLEGTNIDLLEASENEED
EAPHQDICYHLLKLYSDRHYELHPLLNPRTVTADYLDYRLSWHLWMVLQAMNYTHLSEKH
QTMVHTSFAAQLEAVGLWEWAIFVLLHIPDAQQRGNAVQEQLNRHCSLDETQEQKVKELF
LQEKLGIPAEWIHSAKSLRAHRDGDIHKEALHLIEAGQWNKCHQLVVRYLASDAIINENY
SYLKYFLERLAIPECSLQIQDWETAGAVFYDYICIMETVRGIGEVENPTYELEKIHNEVM
SLCSRIELIECFSAKDRLAQSDMAKQIANMLRTVLGLQHSAESPGDRAPSLQHVPLRLLA
PYIRKLPMPEDYALEELRSLTQSYLRELVIGP
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataagtcgcagtttggcactcccaccttcggcaacaccagtggattcactact
tcagcgttcgggcagaatactgcaactccagggtttggtggatttggtgcggccacagct
ggatttggtacagccaccaatactggtggtggactctttggtaacactcaaaacaagcca
ggaggtctgttcggctccagtagttttggacaaccagcaacttcatccaccaacgctggc
tttggttttggcacgtcgacgtccaacagcctgtttgggggcacgagcaccgggggcctg
ttctccaatcagcagagcaatgccttcactcagagcaaacctgctggaggctttggaagt
tttggagccagcacgacgggcggtggcctgtttgggaccaccagcaccgcctctaatcct
ttcggtgggacctctgggaccttgttcgggggaaccacctttagcactgctgctcctact
ggaaccacggttaaattcaatcctccaacaggcacagatacaatggtgaagtctggagtc
agcaccaacattagcaccaagcaccagtgtatcacagccatgaaggaatacgaaaccaag
tcactggaggagctgcgtttggaggattacacagctggccgcaaagggcctcaggcaccc
ctagggggcggtggtggtctgtttggcacttcgacggctacatccagtgccggcactggg
ctgtttggagccactccagccaacccaaccggaggcttcaattttggacagaataaaact
ggcttcggagcaaacactggtctcctttcccaagtgggtgtgctggggacagtctgtggg
tccagtcttcaaaaaacaggtactggtgctttcggcacagccaccggtggcctgtttggt
cagccgcagcagcaggctagcacaggcctctttgggagcaaaccttttggactggccacc
accacacagagcactggctttggtttcggcacaaccaacaccctgggtcagcccaacacc
agcagcatgagtttattcgggactgccccggtctcgcagtcaggagggatttttggaacc
agcaccaacaccagcaccgggaatgcgtttggcgcagggggtggtctctttggcaatacc
aatgctgctttcaccaacgtcaacaataccctgtttgctaacaaacctgctggatttgga
actgctacaacgagtgcttctgccttcggcacagctggtgctggcctgtttggtaacaag
ccgaacctgactattggagccaacgccaatacgtccaactttggatttggcgcaaccgca
gcaaccggtggtctgtttgggaataaacctgcaactggagcactcggaacaacgctagga
ggtggatttggatcagctctgggtgctgggcagacctccttgtttggaagcactcagccc
aagttgggcaccactctgggagccggaacatttggaacaggagccttcaatgcacccaat
gccggagtgggatttggaacacctcaggcccctgtctgcctgactgacccgaatgcctca
gccacgcaacaggctgttttacagcagcagctcaatgctctggcctacacccctttcgga
gattctccactcttcagaaatcccatggttgatccaaagaagaaagaggagcgattgaaa
cccacaaatccagcagcccagaaggcactgactacccccacccactataagctgactccc
cgccctgccaccagagtacggccaaaagccctgcaggccactggctcctccaagtcccag
ctctttgatggactggatgatgatgaacctacatctctatcgaatggcaccttcctgccc
aggaagagcatcaagaagctggtactgaagagcatgaataactctactctgtgctcgcct
gtactctgcaaggaaccaaatgatttggcctcaccatcagactatccagagaatggagag
aatgagcaagaatgtcggttggagagagaggataatgaccagcaggaggtgaataaatgc
tacaccaacaccatagtcaaaccgatcccacagacacccgagggtgtaaacagcaacaga
caccagaactccgctatggacgataccatcactgagatgaacttgaggaacaagctgcga
aatggcatattggaaggcagcagtgaagatccatgctacatcgatgggtccctgagtgtg
gagagggagtctgagatagatgacagtttaccacctcatccagcaggcatagtgctgact
cgagtcggttactataccatcccctccatggatgaactggcccaacaactgaacgagaat
ggagaatgtatcgtggagaacttcaccattggccgcaaaggttacgggtctatatatttc
cctggcgttgtgaacttaaccaacatgaacttggatgagattgtgcatgtccgcaggaag
gaggtgattgtttatctcgacgatgagaaaaagcccccggtgggtgagggcctgaacaga
cgagctgaggtaacgttggatggagtctggccaactgacaagaccactcgctgcctgatc
aagtcgcctgagcgcctgatggagatgggttttgaggagagactggagagctcatcgcgg
aagcagggcgctcgcttcctggagtacaggtctgagactggctcctgggtcttcgaggta
acacatttttccaagtatgggcttcaggattcggatgaggaggatagtgaacagacttca
aaagctgaaaccaagaagatgaagacagcagctcttcctgatcagcaggcagcccaaatc
tgcaagcctgtcaagaacctgcagctggagagcccactgatgcagcagctggggcgtgtg
accgagtttgacagcgatatggctgacatcacccaggagcccatgccggacagtttactg
gatgaggacatcagtgaggaccaggagcttgtgtccgcttccagcaacattgcatccagc
ttgggcatcaacccccactctcttcaggtaatgaaggcctcgctgttgagtgaggatgag
gatgtagataaaatgcaaaatcagcactttgcacatttgacagctgatgaccattgccag
cggatgttaccacggcagatcttgctaaagcaaggggaaagatcaaaaggtctgggtgga
ggcatgttttattgctcctttccaaagaagttcctgcctttcactgtccaccaggagcag
agacagcagcactctccgactgctgtggagatccttcgctcaccgccccttcacccctgg
ccagtggcaggccagctgccctccacattcagtgtgcccagccagctgccagagttgcag
ctgaagacagtggggattagacaacaccagaggctggtgccaatggagcagtcagttact
aacggcaaagggaagcttctgatggacatggccctgtttgcaggacgctcgttccgggtg
ggctgggcacccaactgcacactctgtcacagtggccagctactgagtcatgtgacagaa
tacgacactgacccatgcagtgtggagtataacttctttccaaagccagcaaagatcaaa
catgtttcagagcttcctttcaaggtgcatgtggagaaggtgatgttgaaggaagagcga
gcgagacaggatttgtcattgtacacagagcagctggagattgctctgcgctacagccat
gtgggcacggagggcagctgcccgtttgttgaaccccagcagggggtggatgctctgcac
gagtatgcagcttggatccaggaggctgaagacaagagtgaatacacagaaggtattgtg
agaggctggtcgttagcatggacactgtgtgaggctctctggggtaacctgaaggagctg
gaagctgccttttccgagccgagtccatacatccagcagctggagcgcaggaaagcgttc
tcccattggctctctcggactgcagaggagaggatcgaggaggaggtggctgtgtctcat
cacatgagtcatgtggatgctgtcttcagctatctaactgggaagagaatcagtgaggcg
tgcaaacttgcacagcagtcaggggatcacaggctagccctgctgctcgctcaggctgct
ggtggccagcaggtcagagagctgctcaacctgcaacttgctgactggaaccagatgaag
gctgatcccttcatccaggaggagaggctgaagatctttgctcttctggctgggcaagca
gtgtgggtatcttcagagggttacattaacgtctgctcgcagttggattggaaacgctgt
ctggctgtccacctttggtatatgctgcctcccagatcctccattgctgatgctctcaat
gtgtatagtgaagcctttcagggcagtgaggccgtccagaagtatgcacagtatccactg
cctccctacctggaaggtacaaacattgacctcctagaagcttctgagaacgaagaggac
gaagccccccatcaggacatctgttaccatttactgaagttgtacagcgacaggcactat
gagctgcacccactgctcaatcccaggactgtgacagctgactacttggattacagattg
agctggcacctatggatggtgctgcaggcaatgaactacactcacctatcggagaaacat
cagaccatggtgcacaccagcttcgctgctcagctcgaggcagtcggcctctgggaatgg
gctatctttgtactcctgcacattcccgatgctcagcagcgagggaatgcagtgcaggag
cagctaaaccgacattgctctttggatgagacacaggagcagaaggtgaaagagttgttt
ctgcaggagaagctcggtatcccagcagagtggatccacagtgccaaaagcctgagggct
cacagagacggtgacatccacaaggaggcactgcacctgatcgaagcaggccaatggaac
aagtgtcaccagctggtggtccggtaccttgcatcagatgccattattaatgaaaactac
agctacctgaaatatttcctggagaggctggccataccagagtgcagcttacagatccag
gactgggagactgccggagctgtcttctacgactacatctgcatcatggaaacagtgcga
ggaattggcgaggtggagaatccaacttacgagctggagaaaattcacaacgaggtgatg
tccctgtgcagccggatagaactgatcgaatgtttctcagccaaagatcgactggctcag
tctgacatggctaaacagatagctaacatgctgcgcactgtgcttgggctccagcacagt
gcagagtcacctggggacagagccccgagtctccagcacgttcccctccgcctgctcgct
ccttacatccgcaagctgcctatgcctgaagactatgccctggaggaactgcgcagcctg
actcagagctacctgcgggagctggttattggcccttaa
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integrated database retrieval system
