Chiloscyllium plagiosum (whitespotted bambooshark): 122551236
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Entry
122551236 CDS
T08871
Name
(RefSeq) collagen alpha-2(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122551236
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122551236
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122551236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
122551236
NCBI-ProteinID:
XP_043548761
LinkDB
All DBs
Position
7:complement(52675..309204)
Genome browser
AA seq
1522 aa
AA seq
DB search
MGNLVHMGTLLLFAITLAQLRLVKSQDFETEIDPLSCTQYGNHYQNKDVWKPEPCQICVC
DEGITLCDEITCDELFDCDRKIIPIGECCPICQSSETDLYPDISRGEKGQKGEPGEVRRV
VGIRGPPGAAGPPGSQGSRGAEGQKGPPGVPGPPGPDGVPGIPGDPGPPGPPGHPTHPGF
PGQLASQMAGGDEKSGFRGQLGMVPGTMGEVGSRGPPGIMGPAGPKGQPGSPGEPGDLGP
MGSAGNRGPEGPSGKPGEDGDVGKPGRSGEQGFHGQQGSRGFPGAPGLPGIKGLRGYIGL
KGPKGEPGAAGQKGDQGSLGAMGAPGSKGPRGLPGERGRTGPQGALGPRGAVGAPGLPGA
TGPIGLMGPPGFPGQPGAKGGPGPTGVRGPEGPQGQRGTPGRQGNPGPLGNIGQLGMDGT
FGAKGPLGSPGASGAAGFPGPPGSTGPTGNTGPPGIKGQRGEPGQIGYKGDRGAKGEPGP
PGPQGALGPMGEEGKRGPRGDPGPIGALGVSGERGSPGNRGFPGQDGLPGPKGAQGQRGV
MGPSGPKGSPGDPGRPGDRGLPGARGLTGNPGVPGAEGKPGATGSPGEEGRTGPIGPTGL
RGSPGSMGTVGPRGNSGDPGKTGEKGPAGAPGQRGTPGKDGEAGPQGHIGPMGQAGDRGE
QGPPGPPGFQGLPGPPGPPGESGKPGNEGIPGDLGPIGQLGPRGERGIPGERGLPGPPGL
QGPRGIPGAPGKDGAKGLPGPAGSLGDPGPPGLQGMPGERGASGPAGPKGERGIGGEKGS
EGSLGNEGPRGLPGPPGPPGISGPAGDKGEPGSIGPSGPVGSRGSPGSRGETGPTGAVGF
SGPPGNDGQPGGKGETGEPGQKGDAGSPGPQGLAGSPGPPGPIGVPGLKGGRGTQGPPGA
TGFPGPAGRVGPPGPTGDPGPIGPLGSPGKEGPPGLRGDTGPPGKTGDPGPPGTPGTPGD
KGESGDDGPTGPNGPPGPQGTTGQRGPAGLPGHRGERGMPGLPGPAGQPGKIGPTGTPGE
RGPSGPIGPQGARGPPGELGQDGMPGIDGTPGRDGRPGEPGDRGDPGPAGVPGVQGGPGA
PGPIGPTGEPGARGETGSHGPIGTSGRAGGRGLPGPQGPRGDKGENGIQGERGQKGHRGF
TGLQGLPGPPGPPGEQGGPGIPGPFGPRGPPGPVGPPGKEGHVGFPGPIGPPGTRGSVGE
TGPEGPPGDEGPSGPPGPPGPPTATYEDILGHYEIEPDTLDILNADETSDSMPKDSGVDA
TLKSLSSQLETMRSPDGSRKNPARTCQDLLFCHPEKKSGEYWIDPNQGCVEDAIKIYCNM
DTGETCILADPPEIPRKTWWSKKNDDKNGYLWFGESINGGLQFSYGDKQQSPNTVMIQTT
FLRLLSKEASQNITYHCKNSIAYMDDQTGNLKKALILKSANDIEIKAEGSNRFKYSVLED
GCTRHSGSWGKTVFEYRTQNTARLPIVDIAPVDIATEMTPLGDLYSTLPAMLWGQSLYVF
NLLLTGPTFQHLKHPTKLNANP
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atggggaacttggtgcatatgggaacattgctgctctttgccataacactggcacaatta
agactggtaaaaagtcaggattttgagacagaaattgatcctttaagctgcacccaatat
ggcaaccactaccaaaacaaagatgtctggaaaccagaaccctgtcaaatctgtgtgtgt
gatgaaggaataacactatgcgatgaaatcacgtgtgacgaactatttgattgtgataga
aagataattccaataggagaatgctgtcctatatgtcaatcgagtgaaacagacctgtat
cctgacatttcaagaggagaaaagggacaaaaaggtgaaccaggagaagtccgcagagtt
gttggaataagaggaccaccaggcgcagcaggaccaccaggctcacaaggatcaagaggt
gcagaagggcagaagggaccaccaggtgtgccaggtccacctggacctgatggcgtgcct
ggaattcctggagatcctggtcctcctggtccaccgggacatcccactcatcctggattt
ccaggtcaacttgcatctcagatggcgggtggtgatgagaaatcaggttttcgtggtcag
ctaggaatggtgcctggaacgatgggtgaagtaggatcaagaggacctccaggaatcatg
ggaccagcaggcccaaagggacagcctggctcacctggagagcctggtgacttgggacca
atgggctcagctggtaaccgtggtcctgagggaccatctggaaaacctggtgaagacggt
gatgttggaaaaccaggacgctctggtgagcagggattccatggacagcagggttctcga
ggtttcccaggtgcccctggtctgcctggtatcaagggcttgaggggatacattggcttg
aaaggacctaaaggtgaacctggagctgctggccagaagggtgaccaaggttctctcggt
gcaatgggtgctccaggttcgaagggtccacggggtcttccaggtgaaaggggccgaact
ggacctcaaggtgctctgggtcctcgtggtgctgttggggcaccgggtctgcctggtgct
acgggtcctatcggtttaatgggtcccccaggtttcccaggtcagcctggcgctaagggt
ggacctggtccaacaggcgtccgcgggcctgaaggaccccagggtcaacgtggtacacca
ggtcgccagggtaaccctggacctctgggcaacatcggtcagcttggtatggatggaact
tttggtgcaaaaggcccattgggttccccaggtgcaagtggtgctgctgggtttccaggt
cctcctggatctactggtccaacagggaacacggggcctcctgggatcaaaggtcaaagg
ggagaaccaggccaaataggctacaagggagaccgtggagctaagggcgagcctggccca
cctggtccacagggagcccttggtccaatgggtgaagaaggcaagagaggacctcgtggt
gaccctggtccaattggtgctcttggtgtatcgggagaaagaggttctccaggtaatcgt
ggcttcccaggtcaagatgggctgccaggccctaagggtgctcaaggacaacgcggtgta
atggggccttcaggtcctaaaggatctccaggtgaccctggccgtcctggtgatcgtggt
cttccaggcgcaaggggactgacaggaaacccaggagtgccaggtgcagaaggcaaacct
ggagcgacgggctctccaggagaggaaggacgcacaggccctattggaccaacagggcta
agaggttcacctggttccatgggtacagtaggaccaaggggtaatagcggcgatcctggt
aagacaggtgagaagggtcctgctggtgctcccggtcagcgaggtacacctggcaaagat
ggcgaagctggacctcaaggtcacattggtccaatgggccaagctggagatagaggagaa
caaggcccccctggtcctcctggattccagggtttgcctggacctcccggtcctcctggt
gaatctggcaagcctggcaatgagggcatcccaggtgaccttggtccaataggccagtta
ggtccaagaggggaacgtggcattccaggtgagcgtggtttacctggccctccaggtctt
caaggtccaagaggtattccaggtgctcctggcaaggatggagctaagggtttacctgga
cctgctggtagccttggagatccaggtcctccaggtcttcagggaatgccaggggaacga
ggagcttccgggccagcaggtcctaaaggagaaagaggcattggaggtgaaaaaggatct
gaaggcagtctgggtaatgaaggcccgagaggtttgcctggtcctcctggtccaccgggt
atttctggtcctgcaggggataagggtgaacctggttcgattggaccttctgggcctgtg
ggatctcgtgggtctccaggctcgcgtggtgaaacgggtcccaccggtgctgttggattt
tctggaccacctggcaatgatggacagcctggaggtaaaggtgaaacgggtgagccaggt
cagaaaggtgatgctggttccccaggacctcaaggactagcaggatcccctggtccacca
ggacctattggtgtcccaggtctaaagggtggacgtggcacacagggaccacctggtgcc
actggttttcctggacctgcaggtcgagttgggccaccaggaccaactggtgatccaggt
ccgatcggtcccttagggtctcctggtaaagaaggacccccaggtcttcggggtgacact
ggcccacctggaaagactggtgatcctggccctcctggaacacctggtaccccaggtgat
aaaggcgaatctggagatgatggtccaactggtccgaatggtcctccaggtccacaaggt
acaactggacaaagaggacctgcaggcctgccaggtcatcgtggggaaagaggaatgcct
ggcttgccagggcctgccggtcaacctggaaaaataggaccaacaggaactcctggtgaa
agaggcccttcaggcccaattggtccacagggagcacgtggcccacccggtgaattgggt
caggatggtatgccaggaattgatggcactcctgggcgtgatggtcgtccaggagaaccg
ggtgatcgtggtgatccagggcctgcaggtgttccaggtgtacaaggtggtcctggggct
ccaggtcctattggtccaactggagaacccggtgctagaggtgaaacaggttctcatggc
ccaattggcacctctggacgagctggagggcgtgggctaccaggtcctcaaggtccccgt
ggtgataaaggagaaaacggaattcagggtgaacgaggtcagaaaggtcatcgtgggttt
actggtttacagggtcttccaggtcctcctggtccacctggtgagcagggtggtcctgga
attccggggccatttggtccacgaggacctcctggcccagttggtcctcctggaaaagag
ggtcacgttggtttccccgggcctattggaccccctggtacacgtggcagtgttggcgaa
actggccctgagggtcctcctggtgatgagggcccatctggtcctccaggtcctccaggt
cctcccactgccacctatgaggatattttgggccattatgagatagaaccagataccttg
gatatactcaatgctgacgagacttccgatagcatgccaaaggattcgggagtggatgct
accttgaaatctctcagtagccagttagaaaccatgcgcagtccagatggttctagaaag
aacccagctcgaacatgccaggatcttttgttctgtcacccagaaaaaaaaagtggggag
tattggattgatccgaaccagggttgtgttgaggatgctattaaaatatactgcaatatg
gacactggtgagacctgtattcttgcggatccacctgaaataccacgcaaaacctggtgg
agcaaaaagaatgacgataagaatggatacttatggtttggtgagtccattaatggtgga
ttacagttcagttatggtgacaagcaacagtccccgaatactgtcatgatccagacaaca
tttctccgtcttctgtcaaaggaagcttcccaaaatattacctatcattgtaagaacagc
attgcttacatggatgaccagactggcaaccttaagaaagccttgattcttaagagtgcc
aatgacattgagatcaaagctgaaggaagtaaccgatttaaatatagtgtgctggaagat
ggctgcactagacattctggtagttggggcaagacagtttttgagtatcgaacgcagaac
acggcacgtctgccaattgtggatattgcacctgtggatattgcgacagaaatgactcct
cttggagacttgtatagcactttgcctgccatgctttggggacagagcctctatgttttt
aacttgcttttaactggaccaacatttcagcacttgaaacaccctacaaaactgaatgcc
aatccataa
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