Chiloscyllium plagiosum (whitespotted bambooshark): 122551253
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Entry
122551253 CDS
T08871
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03030
DNA replication
cpla03410
Base excision repair
cpla03420
Nucleotide excision repair
cpla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122551253 (rfc1)
03410 Base excision repair
122551253 (rfc1)
03420 Nucleotide excision repair
122551253 (rfc1)
03430 Mismatch repair
122551253 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpla03032
]
122551253 (rfc1)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122551253 (rfc1)
DNA replication proteins [BR:
cpla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122551253 (rfc1)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122551253 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
Rad17
AAA_30
BRCT_2
AAA_7
AAA_22
AAA_5
AAA_16
RuvB_N
AAA_17
nSTAND3
AAA_33
AAA_18
RNA_helicase
TIP49
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
122551253
NCBI-ProteinID:
XP_043548803
LinkDB
All DBs
Position
1:97524932..97611853
Genome browser
AA seq
1183 aa
AA seq
DB search
MSVQQDIRRFFGGLSTGKKPGSETLERNRAKNVGKGTSDTKKKTDTKGKDSCNSISGKQK
PVHRKKHIIYDSDSESEETPPDKKSKKNSCTTKPVKPSKLETVTIISETDEEEDFQQSTK
IAQRYQENGGHPGTSSSGRSADNKLQVKSPQPKPASPEKLTCTSVRDYFGTSTVQRSNKK
LVASKRKAPSGSAGSTIDDEELARQLQLDEDAELERQLHEDEQFAKTLAMLDELPKSKKA
RTDSEGQELSLSLVVNAEPRKTDEQAAEHSGKANMLSGTDSNVKNCTEKVVSSKSQSLRT
SSQHSPESSSVKVENSFSKSSPVKSSTKLAIMKRKEELTHVIGNSPTRSAQEKRSSPRKE
EKTGFSKQGQTKISPKKEEKTVSPNKEKISPNKKKISPNKSESENPETAEKKRQNYLAYR
SFLNRDGPRALGSKEIPQGAENCLEGLSFVITGVLESMERDDAKSLIERYGGKLTGNISK
KTNYLVTGREGGRAKLDKAESFGTKQIDEDGLLDLIRRLPGKRSKYEIAAENEVKKSNNA
REGGRIMQKGEHQSKTISPISKKQCEDNKGSPSTPENGESSRCAKRSILFKADPFSNQPE
VKCEPQLQTSMKEEQSLLWVDKYKPAALKNIIGQQGEQSCANKLVRWLKRWHVNNSGDSK
PTAKFTKFGGKDDGSSFKAALLSGPPGVGKTTTATLVCKDLGYSYVELNASDARSKNTLK
EVIAESLNNTSIKGFSSGAPSVSTKHLLIMDEVDGMAGNEDRGGIQEMISLIKRTKVPIL
CICNDRNHPKIRSLANYCFDLRFQRPRVEQIKGAMMTVAFKEGLKIPPPAMNEIILAANQ
DIRQVLHNLSMWCAENKTLTYDQAKENGSKTRKDTKLGPFDVVRKVFATGEEAAHMSLID
KSDLFFHDYSIAPLFVQENYLQVKPAAAGTNMKKHLMLLSKTAESICDGDLVDKRIRSLQ
SWNLLPTQAIYASVIPGELMRGYMSQFPSFPSWLGKFSSTNKHDRIVQELTRHMCLRTHA
SKRAVNLDYLPYLRDTLVQPLTLQGSNGAQEAVATMNAYYLMKEDVDSIMEISSWAGRPD
PFSKLDPKVKAAFTRTYNRETHLTPYALQAVKKLKRGSTAGSSLDTEPNDDLQTEDVQSE
ETEDNLELDGMIKPKKPKAKNKIEEQLPQQKGRKDKGKRKATK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgcagcaggacatcagaagattctttggtggcctttctactgggaagaaacct
gggagtgagactttggaaaggaatcgggctaaaaatgttggcaagggaacttcagataca
aagaagaaaactgataccaagggaaaggattcatgcaattcaatatcaggaaagcaaaag
ccagtgcacagaaaaaaacacattatttatgattcagattctgaatctgaagagactcct
ccagataagaaatctaagaaaaactcttgcaccaccaaacctgtgaagccttccaaacta
gagactgttacaataatttctgaaactgacgaagaggaagattttcaacaaagtacgaag
attgcccagaggtatcaagaaaatggtggtcaccctggaacatctagctctggaaggtct
gcagacaataaattgcaggtcaaatcgccacagcctaaaccagcgagtccagagaaactc
acctgcacatctgtgcgcgattactttggcacaagcacagttcagagatcaaataaaaaa
ctggtggctagcaaaaggaaagcaccttcaggcagtgctggttccacaattgatgatgag
gagctggctcgtcagctgcaacttgatgaggatgcagagcttgagaggcagctacatgag
gatgaacaatttgctaaaacactggccatgttggatgagttgccaaaaagtaaaaaggcc
cgtactgattctgaaggccaggaactatccttatccttggttgtaaatgctgaacccaga
aaaacagatgaacaggcagcggaacattctggtaaagccaatatgttgagtggaactgac
agcaatgtgaaaaattgtactgagaaagttgtaagtagcaaatcacagagcctgaggact
tcctcccaacactcacctgaatcttccagtgttaaagtggaaaactcatttagtaaatca
tctccagtcaaaagcagtacaaaacttgctatcatgaaacgtaaagaagaactaacgcac
gtgataggaaacagtccaacaagatcagcccaagagaagagaagttcgccaaggaaagag
gagaaaactggattttcaaagcaaggtcaaaccaagatttctcctaagaaagaagaaaaa
actgtctctccaaataaagagaagatttctccaaacaaaaagaaaatatccccaaataaa
tctgagtctgagaacccagagaccgctgaaaagaagcgtcagaattacctggcctaccgt
agcttcctgaaccgtgatggtcctcgagctctggggtctaaagaaatccctcagggagct
gagaactgcttggaaggactttcgttcgttattacaggagtcctggagtccatggaacgt
gatgatgctaaatctttaatcgaacgttatggagggaagctgacaggaaatattagcaag
aaaaccaattacttggtaactggtcgagaaggtggacgagcaaaactggacaaggctgag
agttttggaacaaagcaaattgatgaagatggattgctggatctaattcgtagattgcca
ggaaagagatccaagtatgagattgcagctgaaaatgaggtgaagaaatcaaataatgcg
agagagggtgggaggatcatgcagaaaggcgaacaccagagcaagacgatttcaccgata
tcgaagaaacagtgtgaagataacaagggcagtccgtcaacacctgaaaacggcgagtct
tcaagatgtgctaagaggagtattttgttcaaagcagatcctttcagcaatcaacctgaa
gtgaagtgtgaacctcagttgcaaacttcaatgaaggaagagcagagtttgctgtgggtg
gataaatacaaacctgcagcgctgaagaatataataggacagcaaggggaacaaagctgt
gcaaataaactagttcgttggttgaaacgatggcatgtgaacaactctggggacagcaaa
cccacagcaaaattcactaaatttggtggaaaggatgatggttcaagtttcaaagctgca
ctgctgtccggtcctcctggtgtaggtaaaacaaccacagccactctggtctgtaaggat
ctgggctacagctatgttgaacttaatgccagtgatgctcgcagcaaaaacacactgaag
gaagtgatagcagagtcactgaacaatacaagtatcaaaggattctcatcaggagcacca
tcagtaagcactaaacacttgctaatcatggacgaggtggatggaatggctggcaatgag
gacaggggagggatacaggaaatgatttctctcattaaacggaccaaagttcctattctc
tgtatatgtaatgaccgaaatcatcccaagatccgctcactggccaattactgctttgac
ctccgctttcagcggcctcgagtagaacaaatcaagggagcaatgatgactgttgctttt
aaagaaggcttgaagattccccctcctgctatgaatgaaattatacttgcagcaaatcag
gacatcagacaggttctgcataatctgagtatgtggtgtgcagaaaacaagactttgact
tatgatcaggcaaaagaaaatggcagcaagacgagaaaagatactaaactgggtcctttt
gatgttgtgaggaaagtatttgctactggagaggaggcggcccacatgagtctgatagac
aagtccgaccttttctttcatgattactcaatagcaccgctctttgtgcaagaaaactat
ttgcaagtgaagcccgcagctgctggaacaaacatgaagaagcacctcatgctcttgagt
aagacagcagaaagtatctgtgatggggatcttgttgataaaagaattcgttctctgcag
tcgtggaatctcctccctactcaggccatttatgccagtgtgatccctggtgagttgatg
aggggatacatgtcacagtttccaagtttcccaagctggttgggaaaattttcatccact
aataaacatgatcgtattgtgcaagaacttaccaggcacatgtgcctaaggacgcatgcc
agtaaacgagctgtaaacttggattatcttccttacctgcgggatactttggtgcagcct
ctaacacttcagggatcaaatggtgctcaagaggcagttgcaacaatgaatgcatattat
ctgatgaaagaggatgtagatagtatcatggagattagcagctgggctggtcgacctgat
cctttctcaaaactagatcctaaggtgaaagctgcatttacacggacctataacagagag
acacatttgactccctatgcactacaagctgtaaagaaattgaaacgtggaagtacagct
ggatcatcactggacactgaacctaatgatgacttgcagacagaggatgtacagtcagaa
gagactgaggataatttggaattagatggaatgattaagccaaagaaaccaaaagcaaag
aacaaaattgaagaacaattaccacagcagaaaggaagaaaagataaagggaaacgaaaa
gcaaccaaatga
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