Chiloscyllium plagiosum (whitespotted bambooshark): 122551274
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Entry
122551274 CDS
T08871
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122551274 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122551274 (sf3b1)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122551274 (sf3b1)
Spliceosome [BR:
cpla03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122551274 (sf3b1)
Complex B
122551274 (sf3b1)
Complex C
U2 SnRNP specific factors
122551274 (sf3b1)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122551274 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
CEP104-like_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
122551274
NCBI-ProteinID:
XP_043548853
LinkDB
All DBs
Position
7:complement(6285533..6347911)
Genome browser
AA seq
1329 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQNKKAALVVEGDADGVGLDSTGYYDQEIYGGSDSRFAGYMTS
IPAHEQEEDDDDYSSPSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQRIAEREDE
YKARRRQMIISPERHDPFADGGKTPDPKVHARTYMDVMREQHLTKEEREIRQQLAEKAKA
GDLKAVNGSAQQPARRKRRWDQTADQTPSATPKKVSSWDQAETPGHTPGHTPGHTPGHTP
GHTPGHTPGNTPSQSRWDETPGRSKGSETPGATPSTRMWEPTPSHTPAGAATPGRDTPGH
ATPGHGGATSSVRKNRWDETPKTDRETPGHGSGWAETPRTDRGGDSIGETPTPGASKRKS
RWDETPVSQLGGSTPLLTPSGITPKGTPAMAMATPTPGHLMSMTPEQLQAWRWEREIDER
NRPLTDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGLTGFHMQSEERSAKN
MNDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAA
LRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL
VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVV
ASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLV
DEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIP
LMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFF
KHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKI
MGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGT
VLWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILG
ALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREW
MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA
IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED
ALMDRDLVHRQTASAVVQHMSLGVYGFGCEDALNHLLNYVWPNVFETSPHVIQAVMGALE
GLRVALGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIFNDEKNTH
VRYELDYIL
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaggcacagatcagagagatccagaac
aagaaagcagctcttgttgtagaaggagatgctgatggagttggtcttgattcaactggt
tactatgatcaggagatatatggtgggagtgacagcagatttgcaggatatatgacatca
attcctgcacatgaacaagaagaggatgatgatgactattcgtctccaagcttgcttggt
cagaagaaacctggatatcatgcaccagtggcactattaaatgatataccacaatcaact
gagcagtatgatccatttgctgaacatcgaccgcagcgaattgctgaacgggaagatgag
tacaaagcacgtaggagacagatgattatttcccctgaacgtcatgacccgtttgcagat
ggtggaaagacaccagaccctaaggtccatgccagaacttacatggatgttatgcgagaa
cagcatttaacaaaggaagagagggaaataaggcaacagcttgctgagaaagctaaggct
ggagatcttaaggcagtcaatggatcagcccaacagcctgctaggcgcaagcgtcgctgg
gatcagacagcagatcaaactcccagtgccacacccaagaaagtatccagctgggaccaa
gcagagactcctggacacacacctggacacacacctggccatactccaggacatacccct
ggtcacactcctggtcacactcctggaaacactccttctcagagccgatgggatgaaaca
cccggtcgttcaaaaggcagtgagactcctggtgcaaccccaagcacaagaatgtgggag
cctactcctagccacacaccagcaggggctgctacacctggacgagatacacctgggcat
gctacgccaggtcacggaggcgcaacttccagtgtgcgcaaaaatagatgggatgaaact
ccaaaaacagatagggaaacacctgggcatggcagtggctgggctgagacaccgcggaca
gaccgtggaggtgattctataggtgaaacgccaacccctggtgcaagtaaaagaaagtct
cgttgggatgaaacaccagttagtcaattgggtggcagcactccattgcttactcccagt
ggaattacaccaaagggcacacccgcaatggctatggcaactcctacaccaggtcatttg
atgagcatgacacctgagcaactacaggcatggcgttgggagcgggaaattgatgaaaga
aatcgcccacttacagatgaggaactggatgcaatgttccctgaaggctataaggtcctt
ccacctccagctggttatgtcccaatccgaacacctgctcgtaaactgactgcaacccca
acaccacttggaggcctaactggattccacatgcagtccgaagaacgcagcgcaaagaac
atgaatgaccagccctctgggaatcttccattcctgaaacctgatgacatccaatatttt
gacaaattactggttgaagttgatgaatcgacattaagtccagaagagcaaaaggaaaga
aagataatgaagttgcttctgaaaataaagaatggtactccaccaatgaggaaggccgct
ttgcgtcaaataactgataaagccagagaatttggagctggacccctgttcaatcaaatt
cttccactgctgatgtccccaacacttgaagaccaagagcgtcacttgctggttaaagtt
attgaccgaattctgtacaaattagatgacttagttcgaccatacgtgcacaagatactt
gtggttattgagcctttgctgattgatgaggactattatgctagagtggaaggcagagaa
attatctcaaatttagcaaaggctgccggtcttgcgacaatgatttccactatgcgtcct
gatatcgataacatggatgagtatgtgcgtaacacaacagctagagcctttgctgttgtt
gcttcggctctgggtattccatcgctgttacctttccttaaagctgtgtgtaaaagcaag
aaatcatggcaggctcggcatacaggaatcaaaattgtacagcagattgccattctaatg
ggttgtgccatcttgcctcatctgaggagcttggttgaaattattgaacatggtctggtt
gacgaacagcagaaggttcgaaccattagtgccctggctattgctgccttggctgaagct
gcaactccttatggtattgaatcatttgattctgttctaaaaccgttgtggaagggtatt
cgtcagcacagaggcaaaggtctggccgccttcttaaaggctattggatatcttattcct
ctcatggatgctgaatatgctaattactatactcgggaagtgatgttgatccttatccga
gagtttcagtctcctgatgaagaaatgaaaaagattgtgctcaaggtggtgaaacagtgt
tgtggaacagatggtgtggaagccaactacatcaagactgaaatccttcccccgttcttc
aagcacttttggcaacatcgaatggcattggacagaaggaactacagacagttagttgac
accacagtggaacttgcaaacaaagttggagcagctgaaataatatccagaatagttgat
gacttaaaagatgaagccgaacaataccgaaaaatggtgatggaaaccattgaaaagatt
atgggtaacttgggagctgcagatattgatcacaaactggaggaacagcttattgatggt
attctgtatgccttccaggaacagactactgaggattctgtaatgttaaatggttttggt
acagtggtaaatgcattaggtaagcgagtgaagccctatttaccccagatttgtggtaca
gtattatggcgtctaaacaacaaatcagccaaagtgcgacagcaagctgcggatctcatc
tctcgaattgcagttgtcatgaagacatgtcaagaggaaaaactaatgggccacttgggt
gttgtactatatgaataccttggtgaagagtaccctgaggttctgggtagcatcctggga
gcacttaaagctattgtaaatgttataggtatgcataagatgacaccgcctataaaggat
ctacttccacgccttactccaatcctaaagaataggcatgagaaggttcaggagaattgt
attgacctggttgggcgaattgctgatcgaggtgcagagtatgtatctgctcgtgaatgg
atgaggatctgctttgaactattagaacttttgaaagcacacaaaaaagccatcagaagg
gcaacagtaaacacttttggctacattgcaaaagctattggtccccatgatgtattggcc
acactgttaaataacctgaaggttcaagagcgccagaacagagtctgtaccacagtagct
attgccattgtggcagaaacatgttcgccgttcacagtgttacctgccttgatgaatgag
tacagagttcctgaactgaatgtccagaatggagtgcttaaatctctttcgtttctattt
gagtatattggagaaatgggaaaggattacatttatgcggttactccattgcttgaagat
gctttaatggacagagacctggttcacagacagacagcaagtgcggttgtgcagcatatg
tcgctgggagtatatggatttggctgtgaagatgcactgaatcacttgttaaattatgta
tggcccaatgtttttgagacatcgccacatgttattcaggcagtcatgggagcattggag
ggtttaagggtcgcattaggtccttgtagaatgttacagtattgtttacagggcttgttc
catccagctaggaaagtacgtgatgtatactggaaaatctacaactccatctacattggt
tcacaggatgccctaattgcacattatccaaggatcttcaatgatgaaaagaatacacat
gtccgctatgaacttgattacatcttataa
DBGET
integrated database retrieval system
