Chiloscyllium plagiosum (whitespotted bambooshark): 122551389
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Entry
122551389 CDS
T08871
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpla04147
]
122551389 (col18a1a)
00535 Proteoglycans [BR:
cpla00535
]
122551389 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122551389 (col18a1a)
Exosome [BR:
cpla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122551389 (col18a1a)
Proteoglycans [BR:
cpla00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122551389 (col18a1a)
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122551389 (col18a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
Laminin_G_3
SCP2
Motif
Other DBs
NCBI-GeneID:
122551389
NCBI-ProteinID:
XP_043549145
LinkDB
All DBs
Position
7:20486788..20791049
Genome browser
AA seq
1565 aa
AA seq
DB search
MVTGKGGNRSDGQSPLSAPSASDHSKHDGIVLDNSSRAIMLVFNQNVTNGVLGALAATAA
AAAAAADLGAKLDLLTSTKASDPDFRKAVPGSGAPLPPNCAPLPPSLRFCHPLGRGGVRL
PNHLHQASVAEIQEAAQSWGALLASGCHPGLVPFLCRLLAPRCGPPRQREAPCRGHCEAV
QDHCWMELAGSGLQLPCHLLPDAEEGRGCQSLMVGRGNERSVSLLQLVGDPAPKQVTVEY
GPDQNPVYEFGPNVNTGQLARAYFKSPFFRDFSLLFTIKPASSKSGVLFAITDASQTVIY
VGVKLSEVQGGSQNVVFYYTEPGSQQTNEAARFRVKSLTNKWVKIALAVEGDVVTFYLDC
ELQGSVSFERSPDEMEIDPSSGVFVALAGGADPDNFLGFISDLKVKGDPWAARLYCDEDD
DGEASGDYGSGYGRGTQTVTPPTHHLPEHAPVRPPPLTIERQHTRPAEEGSRRIQVSGTD
RGSVGEKVYSGPKGESGAGFGAVIKGEKGDKGDPGEKGTAGFGYRGPKGEKGSPGIQGPP
GPPGSAATTVRERGDGVTVERVVGVEGPPGPQGPPGPPGRAGEPGDPGEDGKRGEIGPQG
FPGTPGDHGAKGNKGDPGIGSPGPPGPPGPPGPPCLPGPPAVITKMDKLTFLDMEGSGFD
GNLEMLRGLPGPPGPPGLPGLPGRPGVFGMNGTAIPGPPGLPGPPGADGRPGVSGPMGPL
GPPGQDGRPGLAGEKGLQGEPGDLGLPGAQGPKGSAGQAGPPGQPGLAGLPGPVGPRGPP
GPPGPSAAVLRAGFEDAEGSALPIMTGVPGERGLEGAQGVPGVPGLPGVPGLKGEPGIPG
ELGLQGPQGYPGEIGLTGPPGPQGPKGAQGDPGMKGEPGRDGVGLPGPPGPPGITYSGGS
AVDGVTFVPGAQGPRGIPGQAGLPGPSGPKGERGHPGVTGPTGPKGDRGEPGFIISPDGT
TLDSLLASGIGSKGDAGIPGPIGPQGLPGYPGQKGEIGLPGRPGRPGINGLKGEKGEPGD
FSGGFGYRNIPGPPGPPGPPGPPGMPASDHVFRGAAEGYPGIHGPQGPKGDRGNPGYMGP
PGQKGDIGEPGLPGPPGTIPHEVYDFTSSLRGAKGETGDVGQKGEKGAPGDGYGSGVAGP
QGPPGPPGPPGLQGPKGDSIVGPRGLPGNAGPPGYGYPGAPGPPGPPGPPGVSASGHHRT
SIVGPPGPPGPPGSAASASGVTVLQTYQTMLSISRSLHEGTLAYVMERGDLYIRVRDGWR
QVYLGEYIPYHGTGINGNNVEAVGSPPVVQYSTDSESAQTVEGAAPDSGAPEPRTESPWG
PEHRWPVHHRPETPQLNHPRHQQPQSVPRWLTTSAPPRSAAPPRHSHHGLSHRPHVPPSG
HAESLHGVPMLHLMALNTPLTGNMQGIRGVDFQCFQQARGVGLMGTFRGFLSSKLQDLYS
VVRRADRHSVPIVNSKGQVLFDSWSSLFSGSQARIKPNTPIYSFDGRDVLQDHAWPEKFV
WHGSDSRGRRLSQSYCEAWREAQDNKVGMASSLLSGQLLEQRPSPCSHSFIILCIENSYL
PHTRK
NT seq
4698 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccgggaagggtgggaaccggagtgacggccaatcacctctcagcgctccgagc
gccagtgatcactctaagcatgatgggatagtactggataattcaagccgtgctattatg
ctggtgtttaatcagaatgtgactaatggtgtgctgggtgcccttgctgctactgctgct
gctgctgctgctgccgctgacctcggagctaagctagatttactaacctccactaaggct
tctgatccagatttccggaaggccgtgccaggctctggagcccctttgccccccaactgc
gcccctctgccaccctctctgaggttctgccacccactaggccgtgggggcgtccggctc
ccgaaccacctgcatcaggccagcgtggcggagatccaggaggcggcgcagagctggggg
gctctcctggcttccggctgccaccctggcctggtgccgttcctctgccgcctgctggca
ccgaggtgcggacccccccggcagcgggaggcgccttgccgcgggcactgcgaggccgtg
caggaccattgctggatggagctggcgggcagtggcctgcagctgccctgccacctcctc
cccgatgccgaagaggggcgtgggtgccaatctctcatggtcggcagaggtaatgagcgt
tctgtgtctttgctgcagttggttggagaccctgctcctaagcaggtcactgtggagtat
ggacctgaccaaaacccagtgtacgagtttggcccaaatgtcaacaccgggcagttggca
agagcttacttcaaaagccccttcttccgtgacttctcattgctcttcacaatcaagcca
gcgtcatccaagagtggcgtgctctttgctatcaccgacgccagtcaaactgtcatctac
gtgggagttaagttgtccgaggtgcagggtggatcacagaacgttgtgttctattatact
gagcctggctcccagcagactaacgaggctgcacgcttcagggtgaaaagtttaaccaac
aaatgggtcaagattgcccttgctgtggagggcgatgtcgtcaccttttacctggactgc
gagctgcaaggatctgtgtcctttgaaaggtccccagacgagatggagattgatccgtcc
tctggggtctttgttgcactggcaggcggtgcagatcccgataacttcttgggtttcatc
tcggatctgaaggtgaagggagacccttgggcagcacgtctttactgtgatgaggatgat
gatggcgaggcttcgggagattatgggagtggatacggaagaggaactcaaacggtgaca
cctcctacgcaccatctcccagaacacgcaccagtgcggccccctcccctcacaatcgaa
cgacagcataccagaccagctgaggaggggagcagacggatacaggtctcaggaacagac
agaggctcggtgggagagaaggtttacagtgggccgaaaggagagagtggagctggtttc
ggtgcagtcatcaaaggagagaagggtgacaaaggggatccgggtgaaaagggcaccgcc
ggattcgggtaccgcggtccgaaaggagagaaaggatcccccgggatccagggcccgccg
ggtcctccaggatctgccgctaccacagtgcgggaacgtggtgacggagtgacggtggag
cgtgtggtcggtgtggaaggacctcctggaccgcagggacctcccggaccccccgggaga
gccggagagccgggtgatcctggcgaagacggcaagaggggtgagatcggccctcaaggt
ttcccagggaccccgggggatcacggagcgaaaggcaataagggtgacccagggattgga
tccccaggaccccctggacctccaggaccccctggaccgccttgtttgcccggcccacca
gctgtaatcaccaagatggacaaactaacgtttcttgatatggaaggttccggattcgat
ggcaacctggaaatgttgcggggattgcccggacctccggggccacctggactccctggt
cttcccggacggcctggagtgtttggtatgaacggcactgcgatccctggaccgccgggt
ctgcctggacccccaggagcagacgggaggcctggggtctctgggccaatgggacctctg
gggccacctggacaagatggccgaccaggactggctggggagaaaggactgcagggcgag
cctggtgacttgggactcccgggagctcaggggcctaagggatcggcggggcaggccggg
cctcccggtcagcctggcctagctgggttgccggggcctgtaggaccccgaggacctcct
ggtcctcctggaccctcggctgcagttctccgcgctggctttgaggacgcagaaggatct
gcccttccgatcatgaccggagtgcctggggaacgggggctggaaggtgctcagggggtc
cccggggtgcccggtcttcctggagtgcctggtttgaagggtgagccaggaatcccagga
gagctgggattgcagggacctcaaggatatcctggagaaatcgggttaacaggaccacct
ggccctcagggaccgaagggtgcccagggagatccaggcatgaagggtgagccgggcaga
gatggagtcggattgccaggtcctcctggtcctcctggaattacctacagcggtggcagt
gcagtcgatggtgttacatttgtgcccggtgcacagggcccaaggggcattcctggccaa
gctggattgccgggtcccagtggaccgaaaggcgaacgaggacacccaggtgtcacagga
cccacagggccgaagggtgataggggagagcctggcttcatcattagccccgatggaacc
acattggatagtctgctggccagtggcattggatcaaagggtgatgctggcattccagga
cccattggcccgcagggcttgccgggatacccaggtcaaaaaggtgaaattggattgcca
gggagaccgggtcggcctggcataaatggactgaaaggagaaaagggcgagccaggagat
ttcagtggtggttttgggtaccggaatattccaggaccacccggtcctccgggaccccct
ggaccacctggtatgccagcgtctgatcacgtgttcagaggggcagctgaaggataccct
ggaatacatggaccacaaggtcctaaaggagaccgtggcaacccagggtatatgggccct
ccaggacagaaaggggatattggggagcctgggcttcctggccctccaggaaccatccca
catgaggtatatgacttcacctcctctctcagaggtgcaaaaggagaaacgggtgacgtg
gggcagaaaggagagaagggcgcaccaggagatggctatggttctggtgtagccgggccc
cagggtcctcctgggcctccgggaccaccgggtcttcagggaccgaaaggagacagcatt
gttggacctagagggttaccaggcaacgcgggaccccctggttatgggtatccaggtgcc
cccggtcctcctgggcctcccggcccccctggagtttctgcttcaggacaccacagaaca
agcatcgtcggaccaccaggtccccctggtccccctggctctgcagcctcagcttcaggg
gttacagtgctgcagacctatcagacaatgctgagtatctctcgcagcttgcatgaggga
acattggcttatgtcatggagcgtggagacttgtatatccgagtccgcgatggctggcgt
caggtttatcttggggaatacattccataccatggtactggaataaatggaaacaacgtg
gaagcggtgggatctccgcccgtggtgcagtactcgacagacagcgaatccgcgcagacc
gtggagggggcagctccagacagcggggctcctgagcctcgcacggagagtccgtggggc
cccgagcaccgttggcccgtgcaccatcgtccggagacgccgcaactcaaccacccgcgc
caccaacaaccccagtcggtcccaagatggctgaccacctctgctccaccccgctcggca
gctcctccaaggcacagccaccacggactctcccatcgaccccatgtgcccccctctggc
cacgctgagagcctccacggagtaccaatgcttcacctcatggctctcaacacccctctc
actggcaacatgcaggggatccggggggtcgacttccaatgtttccagcaggcccggggg
gtggggctgatggggacgttcagaggcttcctctcatctaagctccaggacctgtacagc
gtggtgcggcgggctgacagacactcggtgcccatcgtaaacagtaaggggcaggtgctg
tttgatagttggagctcgctcttctctgggtctcaggctcgtatcaaacccaacaccccc
atctactcctttgacgggagagacgtgcttcaagaccatgcctggcctgagaagttcgtc
tggcatggatcagactccaggggccggcgcctgtcacagagttactgtgaagcctggagg
gaagcccaggacaacaaagtgggaatggcgtcgtccctgctgagcggccaactcctcgaa
cagaggcctagcccctgctcccattccttcattatcttgtgcatcgagaacagctacctg
cctcacacccgaaagtaa
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