Chiloscyllium plagiosum (whitespotted bambooshark): 122551434
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Entry
122551434 CDS
T08871
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122551434 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122551434 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122551434 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpla04147
]
122551434 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122551434 (col6a2)
Exosome [BR:
cpla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122551434 (col6a2)
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122551434 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
122551434 (col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
122551434
NCBI-ProteinID:
XP_043549268
LinkDB
All DBs
Position
7:27887830..27962350
Genome browser
AA seq
1024 aa
AA seq
DB search
MLPAFLTLLLTAWGFVDPVGGQFIPTPSPEDCTGKQECMVTVYFVLDTSESVALQTRIQG
NLVDKIKDFTEDLVNKMTNGAFKNRVKIAWEFGGLHFSDRVEQFSPITASKADFITALRG
VNYIGRGTFTDCALQEMTKNIQQQSRSESRNRFAIVITDGHVTGSRCGGIQRNAEKARDA
GIKVFAVSTDDLKHSQSEQYEQGLRTIANFPHELYRNSYTATSTNRAEPARAIDRIIKVM
KTEAFNDCYKMKCLEYPGGPGLKGFKGRKGEKGSTGEPGDTGPMGRQGDPGIEGPIGFPG
PKGFPGLMGEKGEIGTEGKKGIAGLPGRDGINGQKGKLGRIGAPGCKGDPGDPGAPGYPG
EAGERGFPGDPGPKGDFGRPGRSGSPGDEGDRGPKGQLGPPGRPGLMGQKGAKGNKGIPG
PKGDVGRRGDLGSKGSPGPKGDVGEKGDAGNEGVRGLPGEAGLKGEKGDIGLPGPRGSPG
SPGVAGSNGTRGDPGEIGPRGETGPSGPKGDKGRQGFSFPGPRGEQGDEGVRGPPGYLGI
KGEMGRKGDAGPKGNPGEPGDPGPMGEPGNRGNPGGPGREGDPGPPGDSGLTDCDVMTYV
RETCGCCDCEKQCGPLDIVFVIDSSESIGLTNFTLEKNFVINTVSRLGTIAKDPKSHTGA
RVGVVQYSHDGTFEAVQLNDPKINSLSSFKEAVKKLEWIAGGTWTPSALKFAYDTLIKAN
KRDKAKVFAVVITDGRHDPRDDDSLLTSLCKGDVIVNAIGIGDMFAKPQDDETLKSIACR
QDGRVQRMNLFADLVAEEFIDQMEELLCPDPEIICPDLPCKTELAVAPCTHRPVDLVFMI
DGSERMGGTNFRHVREFIQKMATTLPLANGNSDSSRARIAVLQYGSEDEQQLVFGLSRNL
TDILDSLASMTYLDSSSNVGSAIIYGIRNLVQRPGTSPQAARRGAELSFVFITDGTSGSK
SLGEAVDSMRKHNVVPTVIAVGPEVDMDVLLQIGLGERAAIYQAADYAHILQPSFFDRVY
KWIC
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgctcccggcatttctcacattgctcctgactgcctggggattcgttgacccagtggga
ggtcagttcatccctactcctagtccggaggactgtacagggaagcaggaatgcatggtg
acggtgtactttgtccttgacacttcggaaagcgtcgcgctgcagacccgtatccagggc
aacctggtggataagatcaaagacttcaccgaggacctggtgaacaagatgacgaatggc
gcgttcaagaaccgggtgaaaatcgcctgggagtttgggggcttgcacttctccgatcgg
gtggagcagttcagcccgatcaccgcgagcaaggccgatttcatcaccgcactgcgcggg
gtgaattacatcggccgcggcaccttcaccgactgcgccctgcaggagatgaccaaaaac
atccagcagcagagccgctccgagtcgcgcaaccgtttcgccatcgtcatcacagacggc
cacgtgacaggcagtcgatgcggcggcatccagcgcaacgcggagaaggcgcgcgacgcc
ggcatcaaggtgttcgcggtgtcaaccgacgacctcaagcactcccagtccgagcaatac
gagcagggtctcaggaccatcgccaacttcccacatgagctctaccgaaacagctacacg
gcgacttcaaccaacagggcagagccggccagggcaatcgatcgcatcattaaagtcatg
aaaacagaagccttcaatgattgctacaagatgaagtgtctggaatatccaggtgggcct
ggattaaagggattcaaaggaagaaagggagaaaagggaagcactggtgaacctggtgat
acaggcccgatgggacggcagggtgatcctggtatcgaaggccccattggattccctggt
ccgaagggttttccaggactaatgggtgaaaagggtgaaattggaacagaaggaaagaag
ggtatcgctggattaccaggtcgagatgggattaatggacagaagggaaagcttggacgc
attggagccccaggatgcaaaggagaccctggtgacccgggagcccctggctatcctgga
gaagctggtgagcgaggatttcctggtgaccctgggcctaagggagactttgggcgccca
ggaagaagtggatctcctggagatgaaggagaccgaggtcctaaagggcaactgggacct
cctgggcgtccaggcctaatgggtcagaaaggtgcaaaggggaacaaaggcattcctgga
cccaaaggcgatgtgggtcgcagaggtgatctgggatctaaaggcagtcctgggccgaaa
ggagatgtgggagagaagggtgacgctggaaatgaaggggtacgaggattgccaggtgaa
gctggactcaaaggtgaaaagggagacattgggcttcctggaccgagaggatccccaggg
tcacctggagtggcaggctcgaatggaacgcgaggagatcctggtgagattggaccaagg
ggagagacaggaccatcgggtccgaagggtgacaaaggaaggcaaggattcagcttccct
ggacccagaggagaacagggtgatgagggagtaaggggaccacctggatatctgggtatc
aaaggagaaatgggacgtaaaggagacgcgggtcctaaggggaaccctggtgaaccaggt
gacccgggaccaatgggtgagccaggaaacagagggaacccaggagggcccggtagggag
ggtgatcctggccctccaggcgactctggcctcactgattgtgatgtgatgacttatgtc
agggagacatgtggatgctgtgactgtgagaagcagtgtggaccactcgatatcgtattt
gtgattgacagctcagagagtatcggcctgaccaacttcaccctggaaaagaattttgtc
atcaatactgtcagccgcttgggcacaatagccaaggatcccaaatctcatacgggagcc
cgtgttggtgtcgttcagtacagtcacgacggaaccttcgaagctgtgcagctgaatgat
cccaaaatcaactcgctgtcatccttcaaggaggccgtgaagaagctggagtggatcgcg
ggcggcacgtggaccccctccgccctcaagtttgcgtacgacacgttgattaaggccaac
aagcgcgacaaggccaaggtctttgccgtggttatcactgacggccgccacgaccccagg
gatgatgactcgctgctcacttccctgtgcaagggcgacgtcattgtcaatgccattggc
atcggggacatgtttgccaagccgcaggatgacgaaacgctgaaatcgattgcctgccga
caggacggccgggtgcagaggatgaacctctttgcggacctggtggctgaggagttcatt
gatcagatggaggagctgctgtgccccgaccctgagattatctgccctgatctcccctgt
aaaacagagttggcggtggcaccctgcacccaccggcccgtggaccttgtcttcatgatc
gatggctctgagaggatgggcggcaccaacttccggcatgtgcgggagttcatccagaag
atggccaccacgctgcccctggccaacggcaacagcgactccagccgggcccgcatcgcc
gtgctgcagtatggcagcgaggacgagcagcagctggtcttcgggctaagccgtaacctc
accgacatcctcgactcgctggccagcatgacctacctggactcctcctccaacgtgggc
tccgccatcatttacggcatccgcaacctggtgcagaggccgggcacctcaccccaggcg
gcacgccgtggggcagagctctccttcgtcttcatcaccgacggcaccagcggcagcaag
agcctcggcgaggcggtggactccatgcgcaagcacaacgttgtgcccacggtcatcgcc
gtggggcccgaggtagacatggacgtcctcctgcagatagggctgggcgagagggcagct
atctatcaagctgcagactacgctcacatcctgcagcctagcttcttcgacagagtgtac
aagtggatctgttaa
DBGET
integrated database retrieval system
