Chiloscyllium plagiosum (whitespotted bambooshark): 122551602
Help
Entry
122551602 CDS
T08871
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122551602 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122551602 (prpf40a)
Spliceosome [BR:
cpla03041
]
Complex A
U1 snRNP components
U1 related factors
122551602 (prpf40a)
Complex B
122551602 (prpf40a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
DUF4936
Motif
Other DBs
NCBI-GeneID:
122551602
NCBI-ProteinID:
XP_043549694
LinkDB
All DBs
Position
7
Genome browser
AA seq
901 aa
AA seq
DB search
MSTSDTSNGPGQPTSFGNAPPMIPPPFMGPPGMPPPFPPMGMPPIGQRPPNMPPLPPGMM
PPMIPPMAGPPMGQMPGMMPPMMTGMMMSRMPTAPIQASAPPPGVSTTVTEVTSASPATI
VQVTNPTVSSVQQISATNESSGEEQPKKKSVWTEHKSPDGRTYFYNSETKQSTWEKPDEL
KSHAEQLLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKELEELEEMIRAEEENGVKEAS
LSTVSTSVQEATTTTPVEVTENEVTTSEDHEKEQTIAVEQPEPEPVDITSQPAEEVTKQE
IQENDIPKKEEEVKKEPVRKTYTWNTKEEAKHAFKELLKEKGVQSNASWEQAMKMIINDP
RYSALPKLSEKKQAFNAYKIQTEKEEKEEARLRYKEAKENFQRFLENHEKMTSTTRYRKA
EQMFGETEVWTAVPERDRQEIYEDVLFFLAKKEKEQARQLRKRNTQALKNILDNMANVTY
CTTWSEAQQYLMDNPTFAEDEELQNMDKEDALVCFEEHIRALEKEEEEEKQRGLLRERRR
QRKNREAFQTFLDELHESGHLHSMSTWMELYPAISADIRFSKMLGQPGSTPLDLFKFYVE
DLKARFHDEKKIIKDILKDKSFVVEVNTTFEEFGTVISSDKRAATLDAGNIKLTFNSLLE
KAEAREREREKEEARKLKRKETAFKSMLKQATPPLEPESNWDEVRERFVNESAFEDITVE
SERKRLFKEFLQILEHECQHHHSKSKKHSKKSKKHHRKHSRSRSASESEDDDYHHSKKKK
RSHSKSPSDRTSSEESERSYKKSKKHKKKGKKRRRKSVTPESEGERERERERERDRDRRE
KERSRDDEKERNRHRSQSKHKSPRKATNKDTANWETSDSELSEGELEKRRRTLLQQLDDD
Q
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatcagatacatcaaatggaccaggacaaccaacatcttttggaaatgcccct
cccatgattccaccaccatttatgggaccgcctggtatgcctccaccgtttccacctatg
ggcatgccacctattggccagagaccaccaaatatgccacctttgccaccaggtatgatg
ccaccaatgattcctccaatggctggaccaccaatgggacagatgcctggaatgatgcct
cccatgatgacaggaatgatgatgtctcgtatgccaactgctcccatacaagcaagtgca
cctccgccaggggttagcaccacggtgacagaagtaacatcagcatccccagccactata
gttcaggttacaaatcctacagtttctagcgttcagcaaatttctgctactaatgaatct
tctggagaagagcagcccaaaaagaaatctgtttggactgaacacaaatctccagatgga
agaacctatttctacaattctgagacaaaacagtccacgtgggagaagcccgatgagctg
aaatcacatgcagagcaattattatcaaagtgcccttggaaagaatacaaatcagacact
gggaaaccgtattattataattctcaaacaaaagagtctcgatggacgaaaccaaaggaa
ttagaggaattggaagaaatgatcagagctgaggaagaaaatggtgtaaaggaagcttct
ctttccactgtgtcaacttctgttcaagaggcgacaacaaccaccccagtggaggttact
gagaatgaagttacaacctctgaagatcatgaaaaggaacaaacaatagctgttgagcag
cctgagcctgaacctgtagacatcacttctcaaccagcagaagaagtaacaaagcaggag
attcaagaaaatgatattccaaaaaaagaggaagaagtgaaaaaagaaccggtgaggaag
acctatacctggaacacaaaagaggaggcaaaacatgcatttaaagagctgttgaaggaa
aagggtgttcagtcaaatgcctcatgggaacaagcaatgaagatgattataaatgatcct
aggtatagtgcattaccaaaacttagcgaaaagaaacaagcatttaatgcatataaaata
caaactgaaaaagaggaaaaggaagaagccagacttcgctataaagaagcaaaagaaaac
tttcagcgatttcttgaaaaccatgaaaaaatgacatctactactagatacaggaaagct
gaacagatgtttggagagacggaagtgtggacagcagttcctgagcgggatcgacaggag
atctacgaggatgttttgtttttcttggccaaaaaagaaaaggagcaagcaaggcaattg
agaaagaggaatacgcaagcactgaaaaatatccttgacaatatggctaatgtaacatac
tgcaccacgtggtcagaggcacagcagtatttaatggataatccaacatttgcagaggat
gaagagttgcaaaatatggataaagaagatgctcttgtttgttttgaagagcatataaga
gcattagagaaggaggaagaggaggagaaacaacgaggtttacttagagagcggagacgg
cagcgcaaaaatagggaggcctttcaaaccttcctggatgagttgcatgaaagtgggcat
ttgcactccatgtctacctggatggaattgtatcctgctatcagtgctgatattagattt
tctaaaatgttgggccaacctgggtctactccccttgatcttttcaaattttatgtagaa
gacctaaaagcacgcttccacgatgaaaagaaaataataaaagatattttgaaggataaa
agttttgtggtagaagtcaatactacatttgaagaatttggtacagtcattagttcagac
aagagagcagccacgcttgatgctggtaacattaaactaacttttaacagtctgttagag
aaagcagaagctcgagagcgtgaaagagaaaaggaagaagctcggaaactaaagcgaaaa
gaaactgctttcaaaagcatgttaaagcaagccactcctccacttgaaccagaatcaaat
tgggatgaggttcgagagaggtttgtaaacgaatctgcttttgaagacattactgttgaa
tctgagagaaaaagacttttcaaggaatttctacaaattctcgagcatgaatgccaacat
catcattcaaagagcaaaaaacattccaagaagtcaaaaaagcatcacaggaaacattct
cgttctcgttcagcctcagaatcagaagatgatgattatcaccattcaaagaaaaagaaa
cgttcccattcaaagtccccttcagacagaacctctagtgaagagtcagagcgaagctac
aaaaagtccaaaaaacacaagaaaaagggcaaaaagagaagacgcaaatctgttactcct
gaatctgaaggagagcgagaacgtgagcgggaaagagaaagggaccgggatagacgagaa
aaagaaagaagtagagatgacgagaaagaaagaaatagacacagatcgcagtcaaagcac
aaatcacccagaaaagccaccaacaaagatacagcaaattgggaaacctctgatagtgag
ctaagtgagggggaactggaaaaacgaaggcgaactctcttgcagcaacttgatgatgac
caataa
DBGET
integrated database retrieval system
