Chiloscyllium plagiosum (whitespotted bambooshark): 122551646
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Entry
122551646 CDS
T08871
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122551646 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122551646 (dhx15)
03009 Ribosome biogenesis [BR:
cpla03009
]
122551646 (dhx15)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122551646 (dhx15)
Spliceosome [BR:
cpla03041
]
Complex A
U2 snRNP components
U2 related factors
122551646 (dhx15)
Complex B
122551646 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122551646 (dhx15)
Ribosome biogenesis [BR:
cpla03009
]
Eukaryotic type
90S particles
Helicases
122551646 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
Flavi_DEAD
Atrophin-1
AAA_29
Motif
Other DBs
NCBI-GeneID:
122551646
NCBI-ProteinID:
XP_043549841
LinkDB
All DBs
Position
1:108086114..108189902
Genome browser
AA seq
769 aa
AA seq
DB search
MSKRHRVDLGDDYSSSKKRATSDGRKDRDRDRDKDYDRSKDRDRDRDRDRDRDRDRDRDK
DSRNSSNPTLTTGGGMPLIATPALHQQAINPFTNLPHTPRYYEILKKRLQLPVWDYKERF
TEILTKHQSFVLVGETGSGKTTQIPQWCVDYVRAVVGPKRGVACTQPRRVAAMSVAQRVA
DEMDVMLGQEVGYSIRFEDCSSAKTCLKYMTDGMLLREAMNDPLLERYGVIILDEAHERT
LATDILMGVLKEVVKQRSDLKIIIMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPE
PERDYLESAIRTVIQIHMCEEEEGDVLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKII
PLYSTLPPQQQQRIFEPPPPKKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKV
YNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSN
LGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFP
LDPQLAKMVIASCEHNCSNEILSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLT
LLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYY
INIRKALVSGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNY
IRTCTDIKPEWLVKIAPQYYEMGNFPQCEAKRQLERIIGKLQSKEYSQY
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggcatcgcgtcgacttgggggacgattactcgtccagtaagaagcgcgcc
acctcggacgggaggaaagatagagaccgagatcgggacaaagattatgatcgttcgaag
gaccgagatcgggacagagacagagaccgagaccgagatagagatcgcgacagagataaa
gattcaaggaactcgtccaatccaactttaactacaggaggtggcatgcctctcattgca
accccagcacttcaccaacaggctatcaatccatttaccaacttgccccatactccacgg
tattatgaaatcctgaagaagagacttcagttgcctgtatgggattacaaggaaaggttc
accgaaatcctgaccaaacaccagtcctttgtactagttggggagactggatctggaaag
actacacagattccccagtggtgtgttgattatgtgcgggcagtggtgggacccaaacgt
ggtgtggcctgtactcaacctaggagggtggctgctatgagtgtggctcagcgagtagct
gatgagatggatgtgatgctgggccaagaggttggctactccattagatttgaagactgc
agcagtgcaaaaacatgtctgaagtacatgactgatggtatgttgcttcgagaagctatg
aatgaccctctactagagagatatggggtaatcatccttgacgaggcccacgagcgtaca
ctagcaacagatattcttatgggtgtattaaaagaagttgtgaagcaaagatcagatttg
aagattatcatcatgagtgctacacttgatgcaggcaagtttcaggtctactttgatagc
tgcccactgcttaccattcctggccgtacacatcctgtagaaatattctataccccagaa
ccggagagggattatctagagtcagcgattcgaacagtaattcaaatccatatgtgtgaa
gaagaggagggagatgttctgcttttcctcacaggtcaggaggaaattgatgaagcttgt
aagcggataaaacgggaaattgatgaccttgggcctgaagttggagatatcaaaatcatt
cccctttattctacactgccacctcaacagcagcagaggatatttgagcctccgcctccc
aaaaaaccaaatggagccattggaagaaaggttgttgtgtccacaaatattgctgaaact
tcactcactattgatggcgttgtctttgtgattgatccaggcttcgctaaacagaaggtg
tataatccacgtatcagagttgaatcgttgttggtgactgctatcagcaaagcatctgca
cagcaaagagctggtcgtgctggtcgtaccagaccaggaaagtgctttagactctatact
gaaaaggcctataaaactgaaatgcaggacaatacttacccagagattttgaggtcaaac
ctgggttctgtagttcttcaactgaagaaacttggcattgatgacctggtacactttgac
ttcatggatccaccagccccagagacactgatgagagccctggagcttttgaattatctt
gctgcactgaatgatgatggagacctgacggaacttgggtccatgatggcagaattccct
ttagatccacagttggccaagatggttattgccagctgtgaacacaactgttcaaatgag
attctctccattactgcaatgttgtcagtcccacagtgttttgttcgcccaacggaagct
aagaaagcagcggacgaagccaagatgcggttcgcacatatagatggagatcacctgacc
ctgctcaacgtgtaccatgctttcaagcagaaccatgaatcggttcaatggtgctatgac
aacttcattaactacagatccttgatgtctgctgacaatgtacgtcaacaattatcacga
atcatggacaggttcaatctgcctcggaggagtacagaattcacaagtcgagattattac
ataaatattagaaaggcactggtttctggttacttcatgcaggtggctcatttggaacgc
acaggccactatttgactgtgaaagataaccaggttgtgcagcttcatccttctactgtc
ctggaccacaaacctgagtgggtgctctacaatgaatttgtacttaccactaaaaattac
atccgcacctgtacagatatcaaacctgaatggttagtgaaaattgctcctcaatactat
gaaatgggcaactttccccagtgcgaagccaaaagacaactggaacgtataattggcaaa
cttcagtccaaggaatattctcaatactga
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